DT214587

Overview
NameDT214587
Unique NameDT214587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5823 contig Csv1_Contig5823:1497..2403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD1_HUMAN (Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.039e-17
Identity = 56/224 (25.00%), Postives = 112/224 (50.00%), Query Frame = -3
Query:  219 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 875
            VQ +  AR P+V+     +G  CD+  NN +A+ +++LL  Y  +D R++ L F V+ WA++  +  +  G  +++++  +M I FLQ+R P ILP L  ++          ++   C +   + ++    S+N E++  L+  FF Y+     +  N I++R G   +K           D   + I++PFE + ++ + V +  ++   +    +A I+Q +
Sbjct:  302 VQKILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIK--PSQNTETLELLLKEFFEYFG-NFAFDKNSINIRQGREQNKP----------DSSPLYIQNPFETSLNISKNVSQSQLQKFVDLARESAWILQQE 512          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_BOVIN (U6 snRNA-specific terminal uridylyltransferase 1 OS=Bos taurus GN=TUT1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 57/200 (28.50%), Postives = 108/200 (54.00%), Query Frame = -3
Query:  297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKT--YSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIS-----KQEKDWTRRIGNDRHLICIEDPFEVTHDL 875
            VQ +  AR P+VK     +G+  DI ++N LA+ N++ L   +++D R++ L + ++ WA+ RG++ +    L++YA  L+ I+FLQ R P +LP +  + +     V VD  +C++     +L    S NKE +  L+  FF+  +   D   +++S+R G  +S             R+G     + ++DPF+++H++
Sbjct:  358 VQTVPSARCPVVKFCHRPSGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGS-GPLLNNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEQVEVDGWDCSFPRDASRLE--PSTNKEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQALSVAGGLPSNLSEGLRLGP----MNLQDPFDLSHNV 549          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_HUMAN (U6 snRNA-specific terminal uridylyltransferase 1 OS=Homo sapiens GN=TUT1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 57/202 (28.22%), Postives = 107/202 (52.97%), Query Frame = -3
Query:  297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI----SKQEKDWT-RRIGNDRHLICIEDPFEVTHDL 875
            VQ +  AR P+VK     +G+  D+ ++N LA+ N++ L   +++D R++ L + ++ WA+ RG++ +    LS+YA  L+ I+FLQ R P +LP +    Q   +   V VD  +C++     +L    S N E +  L+  FF+  +   D   +++S+R G  +          W   R+G     + ++DPF+++H++
Sbjct:  358 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGS-GPLLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASRLE--PSINVEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQALPVAGGLPSNLWEGLRLGP----LNLQDPFDLSHNV 551          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_RAT (U6 snRNA-specific terminal uridylyltransferase 1 OS=Rattus norvegicus GN=Tut1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 61/222 (27.48%), Postives = 112/222 (50.45%), Query Frame = -3
Query:  237 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI----SKQEKDWT-RRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAA 875
            VQ +  AR P+VK     +G+  DI ++N LA+ N++ L   +++D R++ L + ++ WA+  G++      L++YA  L+ I+FLQ R P +LP +    Q   +   V VD  +C++     +L    S N E +  L+  FF+  +   D + +++S+R G  +          W   R+G     + ++DPF+++H++   V     K L+     AA
Sbjct:  359 VQTVPSARRPVVKFCHRPSGLHGDISLSNRLALYNSRFLNLCSEMDSRVRPLVYTLRCWAQHNGLSGGGP-LLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRSGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFSCVSC-WDLSGSLLSLREGQALMVAGGLPSDLWEGLRLGP----MNLQDPFDLSHNVAANVTSRVAKRLQSSCGAAA 572          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: POLS_MOUSE (DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 55/229 (24.02%), Postives = 99/229 (43.23%), Query Frame = -3
Query:  195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST-ISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878
            +++ L +A VPI+KL D  T +  DI  N    V   + +++Y +    L  L  ++K +   R +N  + G +SSY+ +LM I FLQ                              ++D       R  E++G L+  FF  +    +Y    I ++ G   I+K+E       G    ++CIEDP    +D+GR    +    +++ F+ A  ++ H  +P  + +
Sbjct:   78 SIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ---------------------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLSHAVSPLARSY 272          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: POLS_HUMAN (DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 55/229 (24.02%), Postives = 99/229 (43.23%), Query Frame = -3
Query:  195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST-ISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878
            +++ L +A VPI+KL D  T +  DI  N    V   + +++Y +    L  L  ++K +   R +N  + G +SSY+ +LM I FLQ                              ++D       R  E++G L+  FF  +    +Y    I ++ G   I+K+E       G    ++CIEDP    +D+GR    +    +++ F+ A  ++ H  +P  + +
Sbjct:   78 SIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ---------------------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLSHAVSPLARSY 272          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: TUT1_MOUSE (U6 snRNA-specific terminal uridylyltransferase 1 OS=Mus musculus GN=Tut1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 56/202 (27.72%), Postives = 107/202 (52.97%), Query Frame = -3
Query:  297 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQE----KDWT-RRIGNDRHLICIEDPFEVTHDL 875
            VQ +  AR P+VK     +G+  D+ ++N LA+ N++ L   +++D R++ L + ++ WA+  G++      L++YA  L+ I+FLQ R P +LP +    Q   +   V VD  +C++     +L    S N E +  L+  FF+  +   D + +++S+R G  +   E      W   R+G     + ++DPF+++H++
Sbjct:  361 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGLSGGGP-LLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRAGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFSCVSC-LDLSGSLLSLREGRPLMVAEGLPSDLWEGLRLGP----MNLQDPFDLSHNV 554          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD5_MOUSE (PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 55/231 (23.81%), Postives = 95/231 (41.13%), Query Frame = -3
Query:  195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878
            +V+ L +A VPI+KL D  T +  DI  N    V    L++D+ +    L  L  ++K +   R +N  + G + SY+  LM + FLQ   R  A +P                                    + G L+  FF  +    +Y    I ++  GS ++K E       G    ++ IEDP +  +D+GR    +    +++ F+ A  ++ H  +P  K +
Sbjct:  222 SVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP----------------------------------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYAYVVLSHAVSPIAKYY 416          
BLAST of DT214587 vs. ExPASy Swiss-Prot
Match: PAPD5_HUMAN (PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 55/231 (23.81%), Postives = 95/231 (41.13%), Query Frame = -3
Query:  195 NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKLF 878
            +V+ L +A VPI+KL D  T +  DI  N    V    L++D+ +    L  L  ++K +   R +N  + G + SY+  LM + FLQ   R  A +P                                    + G L+  FF  +    +Y    I ++  GS ++K E       G    ++ IEDP +  +D+GR    +    +++ F+ A  ++ H  +P  K +
Sbjct:  208 SVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIP----------------------------------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYAYVVLSHAVSPIAKYY 402          
The following BLAST results are available for this feature:
BLAST of DT214587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PAPD1_HUMAN7.039e-1725.00Poly(A) RNA polymerase, mitochondrial OS=Homo sapi... [more]
TUT1_BOVIN1.917e-1428.50U6 snRNA-specific terminal uridylyltransferase 1 O... [more]
TUT1_HUMAN8.054e-1328.22U6 snRNA-specific terminal uridylyltransferase 1 O... [more]
TUT1_RAT1.374e-1227.48U6 snRNA-specific terminal uridylyltransferase 1 O... [more]
POLS_MOUSE2.343e-1224.02DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 ... [more]
POLS_HUMAN2.343e-1224.02DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 ... [more]
TUT1_MOUSE3.997e-1227.72U6 snRNA-specific terminal uridylyltransferase 1 O... [more]
PAPD5_MOUSE9.845e-1123.81PAP-associated domain-containing protein 5 OS=Mus ... [more]
PAPD5_HUMAN9.845e-1123.81PAP-associated domain-containing protein 5 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_03A19_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0003a_A10_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214587 ID=DT214587; Name=DT214587; organism=Citrus sinensis; type=EST; length=907bp
ATAAAATTGCAACTGTCGGTTAAGCCAACAAGTTCTTTACACCCAAGGAT
ATTTAAATAATAAGCTGAAGCCCTAAATACAAAACTATAAAACACAAGAC
CATGGAACGGATGCTTAAGGCTGATCAATCTCTTTTCATTGCAATTACAT
CTCTAACAAGTGTGCTGCTTAAATCAACCAGGAACATAGGGTTCAAAGAG
TTTCACACATGGATTTGGATCATGCTGCATGATTTCAGCAGCACGTTCAA
ACTCCTCCCTTAGAACTTTTATGCTGAACTTGTCCACAACTCGACCAAGG
TCGTGAGTCACCTCAAAGGGATCCTCTATGCATATCAAATGACGGTCATT
TCCAATCCTTCTTGTCCAGTCCTTTTCTTGTTTGCTTATTGTACTTCCGG
TGCGAACGGAAATAACGTTGCTGGCATAATCATGACCATAAGCCCAGTAA
TTGAAAAATGCCCACACAAGTCGACCAATACTTTCCTTGTTACGAGACCC
AAATCCATGAAGTTTGTCAACTTGATCAAAGTAAGCACATTCAATATCAT
CCACAGTCACAGAGTATGTTTTCTCCATTCCCTGTAAGCATGGAAGAATA
GCAGGCCTACGCTGCTGTAAGAAATGAATGCACATCAAAACATACGCATA
GCTAGATAGGGTTCCTTGATAAGTTACATTGACTCCTCTTGATTTAGCCC
AATGTTTAACAATAAAAGCCAACTGCTGCAATCGCACATCTATTTGAGCA
TAATCCCGAAGAAGCTTTGTATTTACAACAGCCAAAAGATTGTTTATGCA
TATGTCACAAGAAATTCCAGTGACTGGATCCATAAGCTTTACTATGGGGA
CCCTTGCCCGTGTCAGTGCCTGCACATTCTGGAGATTATCTGATTGCAAG
ATATCTG
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