DT214585

Overview
NameDT214585
Unique NameDT214585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1656 contig Csv1_Contig1656:741..1646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: STK6_RAT (Serine/threonine-protein kinase 6 OS=Rattus norvegicus GN=Aurka PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = -3 
Query:  626 DVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFK-KGYKPP--HFDKE 880
            D+WS GV+ +  + G  PF+       YR+I R +F+ P + + GA+ LI R+L  N   R+T++++LE  W K    KPP  H  KE
Sbjct:  304 DLWSLGVLCYEFLVGMPPFEAHTYQETYRRISRVEFTFPDFVTEGARDLISRLLKHNSSQRLTLAEVLEHPWIKANSSKPPTGHNSKE 391
[Close]
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: CDR1_SCHPO (Mitosis inducer protein kinase cdr1 OS=Schizosaccharomyces pombe GN=cdr1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = -3 
Query:  680 KGYDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQM 904
            K Y G   DVWSCGVIL+ L++  LPF   N   +Y KI    +  PS  SS A+ L+ R+LD N  TR+TI ++
Sbjct:  178 KPYRGAPADVWSCGVILYSLLSNKLPFGGQNTDVIYNKIRHGAYDLPSSISSAAQDLLHRMLDVNPSTRITIPEV 252
The following BLAST results are available for this feature:
BLAST of DT214585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
STK6_RAT9.845e-1137.50Serine/threonine-protein kinase 6 OS=Rattus norveg... [more]
CDR1_SCHPO9.845e-1145.33Mitosis inducer protein kinase cdr1 OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I16_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E08_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214585 ID=DT214585; Name=DT214585; organism=Citrus sinensis; type=EST; length=906bp
GGCTTTTAGTTCTGTCCACTTCATTTCGCCAGCGAATAACATTCATTTCC
TATTTCTTGAAAATGTGTTTGTACGCATTCACTTACAGAAACCAAAACAA
ATTAGAAGAATTAACTAATAATTGACCCATCTGCAGTTGTTGTCACGCCC
TTAATTCTTCTTTATTTTCTTCCGCTTGCCAGACAACATCTTTCAGTCCC
GATGAAAATTTTTTGTAGAACTTGTGAAACTCTAGCGTGTCGCCACCAGT
TTTGCGAACCTCCACAATGTGCAAAGTGGGAGCCACCTCAAACACCTCAG
TAGCTACAGAGAGCTGGCCTTTCCTTCCAGTTTTATCACCTTGTAACTTC
ATCTTGTAGTTTCCCTTGCGAACATTAAATCCAAGAGGCTTTGCAGCTTC
CTCAATTTTAGACATGATTTCATTTGGAGGGCGTTGGGAAGTAAAACGAG
TTTCTCGCTTCACAAGGCCCGTTTGTTTCTCAAACAAATTTTCAAGGCTG
AAACTCTTGGTCCTAGAGATTAGCTCGAAAGCATTCATTGATACAGGCTT
CTCTTTCTTCTCAGTTACAAGATTTTCCTTCGAGTCATTGAAGATAGCAT
CAACATCATCGAGATTCACTTCCTCTTCCTTATCAAAATGTGGTGGTTTG
TACCCTTTCTTGAACCATTCATCCTCTAACATTTGAGAAATAGTCATTCG
TGTATCANGGTTTGGATCAAGAATACGCTTGATTAGTTTCTTGGCACCAG
ATGAAAACCATGACGGACAAGAGAAATCAGCCCTGCAAATTTTTCTATAC
AAAGCCATAAGATTCGACTCATCAAAAGGCAAGAACCCAGCCATAAGTAC
AAAGAGAATAACCCCGCAGGACCAAACATCAAATGCTCTACCGTCGTATC
CCTTGT
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