DT214585

Overview
NameDT214585
Unique NameDT214585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1656 contig Csv1_Contig1656:741..1646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: SIK3_DANRE (Serine/threonine-protein kinase SIK3 homolog OS=Danio rerio GN=zgc:66101 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  629 KGYDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFDK 904
            K YDG   D+WS GV+L+VL+ G LPFD S L  L  ++    F  P + S+  + LI+ +L      R+++ Q+ +++W ++G   P FD+
Sbjct:  230 KEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTDCEYLIRHMLILEPSRRLSMEQICKNKWMRQGDPDPEFDR 321          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.220e-12
Identity = 51/184 (27.72%), Postives = 86/184 (46.74%), Query Frame = -3
Query:  389 KGYDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFDKEEEVNLDDVDAIFNDS-------KENLVTE---KKEKPVSMNAFELISRTKSFSLENLFEKQTGLVKRETRFTSQRPP--NEIMSKIEEAAK 904
            K Y G   DVWSCG++L+V++ G LPFD+  +  L++K+    +  P + S GA+ LI+R++  +   R+TI ++  D WF     P +    EEV     D+             E+ + E     E      A+ L+   +    ++   K     KR   F S  PP  +E  S++++ +K
Sbjct:  205 KLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNL-PDYLRPMEEVQGSYADSRIVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLLHENQVIQEKSHLSKS----KRVDSFLSVSPPAFSEYTSELQKKSK 383          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: MARK2_MOUSE (Serine/threonine-protein kinase MARK2 OS=Mus musculus GN=Mark2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  647 KGYDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYK 904
            K  DG   DVWS GVIL+ L++G LPFD  NL  L  ++ R  +  P + S+  + L+K+ L  N   R T+ Q+++D W   G++
Sbjct:  224 KKIDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHE 309          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: AAPK1_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragments) OS=Sus scrofa GN=PRKAA1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.904e-12
Identity = 50/215 (23.26%), Postives = 96/215 (44.65%), Query Frame = -3
Query:  254 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFDKEEEVNLDDVDAIFNDSKENLVTEKKEKPVSMNAFELISRTKSFSLENLFEKQTGLVKRETRFTSQRPPNEIMSKIEEAAKPLGFNVRKGNYKMKLQGDKTGRKGQLSVATEVFEVAPTLHIVEVR 898
            Y G   D+WS GVIL+ L+ G LPFD+ ++  L++KIC   F  P + +     L+K +L  +   R TI  + E EWFK+      F ++   +   +D      K++ +       +    F L +      L++    +   +  ET      P       + +A   LG  +R+ +Y+ K+      R  +  ++ ++++V    ++++ R
Sbjct:  151 YAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSXTMIDD--EALKQDPLAVAYHLIIDNRDFYLATSPPDSFLDDHHLTRVPFLVAETPRDELNPQKXKHQGVRKAKXHLG--IRQLDYEXKVVNPYYLRVRRKKMSLQLYQVDSRTYLLDFR 361          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: AAPK2_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Caenorhabditis elegans GN=aak-2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = -3
Query:  593 KGYDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFD--KEEEVNLDDVDAI 904
            K Y G   DVWSCGVIL+ L+ G LPFD+ ++ +L+RKI    F  P +       L+  +L  +   R TI  ++  EWF+K      F    E E ++ D++A+
Sbjct:  259 KLYAGPEVDVWSCGVILYALLCGTLPFDDEHVPSLFRKIKSGVFPTPDFLERPIVNLLHHMLCVDPMKRATIKDVIAHEWFQKDLPNYLFPPINESEASIVDIEAV 364          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: AAPK1_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Rattus norvegicus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = -3
Query:  656 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKK 898
            Y G   D+WS GVIL+ L+ G LPFD+ ++  L++KIC   F  P + +     L+K +L  +   R TI  + E EWFK+
Sbjct:  201 YAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ 281          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: AAPK1_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragment) OS=Pongo abelii GN=PRKAA1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = -3
Query:  656 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKK 898
            Y G   D+WS GVIL+ L+ G LPFD+ ++  L++KIC   F  P + +     L+K +L  +   R TI  + E EWFK+
Sbjct:  196 YAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ 276          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: AAPK1_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Homo sapiens GN=PRKAA1 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = -3
Query:  656 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKK 898
            Y G   D+WS GVIL+ L+ G LPFD+ ++  L++KIC   F  P + +     L+K +L  +   R TI  + E EWFK+
Sbjct:  201 YAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ 281          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: TRIB1_HUMAN (Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  626 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFDKE 898
            Y G+A DVWS GV+L+ L+ G  PF +S+  AL+ KI R  F  P   S  A+ LI+ +L      R+T  ++L   WF+   +P + D E
Sbjct:  260 YSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEPGYIDSE 350          
BLAST of DT214585 vs. ExPASy Swiss-Prot
Match: TRIB1_MOUSE (Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  626 YDGRAFDVWSCGVILFVLMAGFLPFDESNLMALYRKICRADFSCPSWFSSGAKKLIKRILDPNXDTRMTISQMLEDEWFKKGYKPPHFDKE 898
            Y G+A DVWS GV+L+ L+ G  PF +S+  AL+ KI R  F  P   S  A+ LI+ +L      R+T  Q+L   WF+   +P + D E
Sbjct:  260 YSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHVSPKARCLIRSLLRREPSERLTAPQILLHPWFEYVLEPGYVDSE 350          
The following BLAST results are available for this feature:
BLAST of DT214585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SIK3_DANRE3.060e-1235.87Serine/threonine-protein kinase SIK3 homolog OS=Da... [more]
SNF1_SCHPO5.220e-1227.72SNF1-like protein kinase ssp2 OS=Schizosaccharomyc... [more]
MARK2_MOUSE6.818e-1238.37Serine/threonine-protein kinase MARK2 OS=Mus muscu... [more]
AAPK1_PIG8.904e-1223.265'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_CAEEL1.519e-1135.855'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_RAT1.519e-1139.515'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_PONAB1.519e-1139.515'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_HUMAN1.519e-1139.515'-AMP-activated protein kinase catalytic subunit ... [more]
TRIB1_HUMAN1.984e-1138.46Tribbles homolog 1 OS=Homo sapiens GN=TRIB1 PE=1 S... [more]
TRIB1_MOUSE2.591e-1139.56Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02I16_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_E08_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214585 ID=DT214585; Name=DT214585; organism=Citrus sinensis; type=EST; length=906bp
GGCTTTTAGTTCTGTCCACTTCATTTCGCCAGCGAATAACATTCATTTCC
TATTTCTTGAAAATGTGTTTGTACGCATTCACTTACAGAAACCAAAACAA
ATTAGAAGAATTAACTAATAATTGACCCATCTGCAGTTGTTGTCACGCCC
TTAATTCTTCTTTATTTTCTTCCGCTTGCCAGACAACATCTTTCAGTCCC
GATGAAAATTTTTTGTAGAACTTGTGAAACTCTAGCGTGTCGCCACCAGT
TTTGCGAACCTCCACAATGTGCAAAGTGGGAGCCACCTCAAACACCTCAG
TAGCTACAGAGAGCTGGCCTTTCCTTCCAGTTTTATCACCTTGTAACTTC
ATCTTGTAGTTTCCCTTGCGAACATTAAATCCAAGAGGCTTTGCAGCTTC
CTCAATTTTAGACATGATTTCATTTGGAGGGCGTTGGGAAGTAAAACGAG
TTTCTCGCTTCACAAGGCCCGTTTGTTTCTCAAACAAATTTTCAAGGCTG
AAACTCTTGGTCCTAGAGATTAGCTCGAAAGCATTCATTGATACAGGCTT
CTCTTTCTTCTCAGTTACAAGATTTTCCTTCGAGTCATTGAAGATAGCAT
CAACATCATCGAGATTCACTTCCTCTTCCTTATCAAAATGTGGTGGTTTG
TACCCTTTCTTGAACCATTCATCCTCTAACATTTGAGAAATAGTCATTCG
TGTATCANGGTTTGGATCAAGAATACGCTTGATTAGTTTCTTGGCACCAG
ATGAAAACCATGACGGACAAGAGAAATCAGCCCTGCAAATTTTTCTATAC
AAAGCCATAAGATTCGACTCATCAAAAGGCAAGAACCCAGCCATAAGTAC
AAAGAGAATAACCCCGCAGGACCAAACATCAAATGCTCTACCGTCGTATC
CCTTGT
back to top