DT214566

Overview
NameDT214566
Unique NameDT214566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.731e-60
Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.069e-60
Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 108/122 (88.52%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  154 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 275
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 108/122 (88.52%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 108/122 (88.52%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 108/122 (88.52%), Postives = 118/122 (96.72%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   40 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 161
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB7_CHICK (Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB5_XENTR (Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB5_XENLA (Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of DT214566 vs. ExPASy Swiss-Prot
Match: TBB5_RAT (Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = -2 
Query:  255 RYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 620
            RYLT +A+FRG+MS KEVDEQMLNVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of DT214566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB1_GADMO4.731e-6089.34Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB_PSEAM8.069e-6089.34Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB_STRPU1.054e-5988.52Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB_PIG1.054e-5988.52Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]
TBB_PARLI1.054e-5988.52Tubulin beta chain OS=Paracentrotus lividus PE=2 S... [more]
TBB_LYTPI1.054e-5988.52Tubulin beta chain (Fragment) OS=Lytechinus pictus... [more]
TBB7_CHICK1.054e-5989.34Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1[more]
TBB5_XENTR1.054e-5989.34Tubulin beta chain OS=Xenopus tropicalis GN=tubb P... [more]
TBB5_XENLA1.054e-5989.34Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 ... [more]
TBB5_RAT1.054e-5989.34Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_22C01_b2 Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 Citrus sinensis cDNA clone UCRCS10-22C01-E2-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214566 ID=DT214566; Name=DT214566; organism=Citrus sinensis; type=EST; length=861bp
GATTCCAAAGCAAATTGAAGTATCATATTTAAACATACAAGGTTCCAAGA
AAATTAAACAATAAGGGGAAAAGGACGAAAAGATGAAGAAACTATTTCAA
TTAGGCTTCTCCGCTTCTATCTAGATCATGACAAGAAACCAGCAACTGGA
AGTTGAGGTTCCAAAGAATTGCTTCAGAAGCAATCCACCCATCAAAATTA
TTGCTGATAGTCTTCATCAAACTGTTCCTCTTCATCATCATATCCTTCCT
CATCAGCTGTTGCATCTTGGTATTGCTGATACTCTGAAACCAAATCATTC
ATGTTGCTCTCTGCCTCAGTGAACTCCATCTCATCCATACCTTCCCCAGT
ATACCAATGTAAGAAAGCTTTTCTCCTAAACATGGCAGTAAATTGTTCAC
TCACACGCCTGAACATTTCCTGGATAGATGTGGAGTTCCCAATGAACGTG
GAGGCCATCTTCAAACCAGTGGGTGGGATATCACAAACGGTAGACTTCAC
ATTGTTGGGGATCCACTCAACAAAGTATGAGGAGTTCTTGTTCTGAACAT
TCAGCATTTGCTCATCTACTTCCTTGGTGCTCATCTTACCACGGAACATG
GCTGATGCTGTTAGATAGCGGCGTGAGTTTTGAACCTCAGATATTCAATT
TATTCTCTTGAAAAGTAAAAATAAAGATTGAACTCAAATGCACTGAAGCT
CTGATATTTACATAATTATAAACACGAATGTCAATATGTATGCCAGCAGA
CCAACAGACCTTGATAATCTCCTCTCCCCTGCGCCTGCGGTAGTATCTGT
TTTGATCATGATCCTGAATAGGCAATCCCCTGTGGATGGATTTGTGGTGG
TAACAGCCGAA
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