DT214549

Overview
NameDT214549
Unique NameDT214549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = -3
Query:  339 SKSEVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGK-EVAKYQGPRDVESLKTFVLEE 665
            S  +V+ LT++ F  +V   D    V+F  PWC HCK L   +E L  +            DC   K++CSK  +  YPT + F  G  E  K++GPR  ESL  FV  E
Sbjct:   27 SADDVVVLTEENFEKEVGH-DKGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKFEGPRTAESLAEFVNTE 135          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: PDIA3_CHICK (Protein disulfide-isomerase A3 OS=Gallus gallus GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 41/134 (30.60%), Postives = 61/134 (45.52%), Query Frame = -3
Query:  294 LLSLSLAMIHSKSEVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLGGDKE 695
            LL   LA+    S+V+ L+   F   + E+     V+F  PWC HCK L   +E    A            DC A+   C+K  +  YPT K+F DG+E   Y GPR  + + + + ++A  A+       D E
Sbjct:   13 LLVPLLALSAGASDVVELSDADFESGLAERPGLVLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLVKVDCTANSNTCNKYGVSGYPTLKIFRDGEESGTYDGPRTADGIVSHLKKQAGPASVALSSVADFE 144          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: DJC10_PONAB (DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 37/117 (31.62%), Postives = 50/117 (42.74%), Query Frame = -3
Query:  306 EVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 656
            E+ITL +  F D        WFV F  P C HC +L   W D  K +            CG  + LC    ++SYP+  +F  G    KY G R  ESL +F ++      T+   G
Sbjct:  130 EIITLERREF-DAAVNSGELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVN--CGDDRMLCRMKGVNSYPSLFIFRSGMAPVKYHGDRSKESLVSFAMQHVRSTVTELWTG 243          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: DJC10_HUMAN (DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 37/117 (31.62%), Postives = 50/117 (42.74%), Query Frame = -3
Query:  306 EVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 656
            E+ITL +  F D        WFV F  P C HC +L   W D  K +            CG  + LC    ++SYP+  +F  G    KY G R  ESL +F ++      T+   G
Sbjct:  130 EIITLERREF-DAAVNSGELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVN--CGDDRMLCRMKGVNSYPSLFIFRSGMAPVKYHGDRSKESLVSFAMQHVRSTVTELWTG 243          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: DJC10_RAT (DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 36/117 (30.77%), Postives = 50/117 (42.74%), Query Frame = -3
Query:  306 EVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 656
            E+ITL +  F D        WFV F  P C HC +L   W +  K +            CG  + LC    ++SYP+  +F  G    KY G R  ESL +F ++      T+   G
Sbjct:  130 EIITLERREF-DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVN--CGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVSFAMQHVRTTVTELSTG 243          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: DJC10_MOUSE (DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 36/117 (30.77%), Postives = 49/117 (41.88%), Query Frame = -3
Query:  306 EVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLG 656
            E+ITL +  F D        WFV F  P C HC +L   W +  K +            CG  + LC    ++SYP+  +F  G    KY G R  ESL  F ++      T+   G
Sbjct:  130 EIITLERREF-DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVN--CGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTG 243          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: PDI_ASPOR (Protein disulfide-isomerase OS=Aspergillus oryzae GN=pdiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 46/159 (28.93%), Postives = 71/159 (44.65%), Query Frame = -3
Query:  210 AMIHSKSEVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEE---AEKAATKAQLGGDKEL*QVVVLASKTRMANSHQNANGSILTLS 677
            A   + S+V++LT DTF   VKE D     +F  PWC HCK L   +E     +            C   + LC    +  YPT K+F     V  YQG R  E++ ++++++   A    T   L   K + ++VV+     +A+  Q AN    T +
Sbjct:   23 ATAEAPSDVVSLTGDTFETFVKEHDLV-LAEFFAPWCGHCKALAPKYEQAATELKEKNIPLVKVD-CTEEEALCRDQGVEGYPTLKIFRGLDAVKPYQGARQTEAIVSYMVKQSLPAVSPVTPENLEEIKTMDKIVVIG---YIASDDQTANDIFTTFA 176          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 34/99 (34.34%), Postives = 45/99 (45.45%), Query Frame = -3
Query:  375 SKSEVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXDCGA--SKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPR 665
            SK +VI LT DTF   V + D  W V+F  PWC HCKNL   W      +              A  ++ L ++  I  +PT K+F  G+    Y G R
Sbjct:  158 SKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPVDYDGGR 256          
BLAST of DT214549 vs. ExPASy Swiss-Prot
Match: ERP60_SCHMA (Probable protein disulfide-isomerase ER-60 OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 38/135 (28.15%), Postives = 61/135 (45.19%), Query Frame = -3
Query:  294 LLSLSLAMIHSKSEVITLTQDTFTDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKAMXXXXXXXXXXXD-CGASKTLCSKVDIHSYPTFKVFYDGKEVAKYQGPRDVESLKTFVLEEAEKAATKAQLGGDKE 695
            L  L L    S S+V+ LT+D F  ++K    A  VKF  PWC HCK L   +    + +             C   +++CS+  +  YPT K+F +G    +Y GPR+   +  +++  A   + +     D E
Sbjct:    5 LSCLFLVAFASCSKVLELTKDNFHSELKSIPVA-LVKFYAPWCGHCKKLAPEFTSAAQIISGKTNDVKLVKVDCTTQESICSEFGVSGYPTLKIFRNGDLDGEYNGPRNANGIANYMISRAGPVSKEVSTVSDVE 138          
The following BLAST results are available for this feature:
BLAST of DT214549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PDIA6_MEDSA1.281e-1136.36Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA3_CHICK1.281e-1130.60Protein disulfide-isomerase A3 OS=Gallus gallus GN... [more]
DJC10_PONAB2.186e-1131.62DnaJ homolog subfamily C member 10 OS=Pongo abelii... [more]
DJC10_HUMAN2.186e-1131.62DnaJ homolog subfamily C member 10 OS=Homo sapiens... [more]
DJC10_RAT2.855e-1130.77DnaJ homolog subfamily C member 10 OS=Rattus norve... [more]
DJC10_MOUSE2.855e-1130.77DnaJ homolog subfamily C member 10 OS=Mus musculus... [more]
PDI_ASPOR4.869e-1128.93Protein disulfide-isomerase OS=Aspergillus oryzae ... [more]
PDIA6_MESAU8.306e-1134.34Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
ERP60_SCHMA8.306e-1128.15Probable protein disulfide-isomerase ER-60 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_49G10_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-49G10-M20-1-7.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214549 ID=DT214549; Name=DT214549; organism=Citrus sinensis; type=EST; length=697bp
CGACGCCCTCTTTAAATGGGTAACATATTCACCTCAAGTGATTATGACCT
TTGGAGATATTCAACTACAAAATTCCTATTAAGGATATATAAGTACAGAA
TGGCTTGAAACATCTGCTAAATTAAAACAAACTCTGCACAAGACGAGATT
AATAAACAAAAACATGATTGATGAACCCTCCTATGGCCCCCTTGAGATCA
GGATGCAGCTGAAAGTGTGAGAATAGAACCATTTGCATTCTGATGGGAAT
TGGCCATCCTGGTTTTGCTGGCAAGTACCACAACTTGTCACAATTCCTTG
TCACCACCAAGCTGTGCTTTTGTTGCTGCTTTTTCTGCCTCTTCCAAAAC
AAATGTTTTAAGCGATTCAACATCCCTTGGCCCTTGATATTTTGCAACTT
CTTTTCCATCGTAAAAGACCTTAAATGTAGGATAGGAATGGATATCAACT
TTAGAGCATAAAGTCTTGCTTGCACCGCAGTCAACTTCTCCGACCTCTAT
TTCATCATCCCCTTCCATTGCCTTTCCCAGATCCTCCCATAACGACCCCA
AGTTCTTACAATGCTTACACCAAGGCACACAAAATTTCACAAACCATGCG
GTGTCTTTTTCCTTCACCTTGTCAGTGAATGTGTCTTGAGTTAACGTTAT
GACTTCGGACTTTGAATGAATCATTGCCAGGCTAAGCGAAAGAAGAA
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