DT214535

Overview
NameDT214535
Unique NameDT214535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5318 contig Csv1_Contig5318:336..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.061e-13
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIF-DGSCGT-YPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            PVSV I+AS   FQ YS G++ D +C +   NHAV AVGYG     +   + I+KNSWG  WG  GYI + RN       C I  LASFP
Sbjct:  244 PVSVAIDASLTSFQFYSKGVYYDENCSSDNVNHAVLAVGYGIQKGNK---HWIIKNSWGESWGNKGYILMARN---KNNACGIANLASFP 327          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.061e-13
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIF-DGSCGTYP-NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            PVSV I+AS   FQ YS G++ D +C +   NHAV AVGYG     +   + I+KNSWG  WG  GYI + RN       C I  LASFP
Sbjct:  245 PVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGKK---HWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 328          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = -1
Query:   85 KALANQ-PVSVGIEASSKDFQHYSGGIF-DGSCGTYP-NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 366
            KA+A   PVSV I+AS + FQ YS G++ +  C     +H V  VGYG+  S   +DY +VKNSWG  WGE GYI++ RN       C I   +S+P
Sbjct:  246 KAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDES--GMDYWLVKNSWGTTWGEQGYIKMARN---QNNQCGIATASSYP 337          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIF-DGSCGTYP-NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            P+SV I+AS   FQ YS G++ D +C +   NHAV AVGYG     +   + I+KNSWG  WG  GYI + RN       C I  LASFP
Sbjct:  245 PISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGNK---HWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 328          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = -1
Query:  139 KALANQPVSVGIEASSKDFQHYSGGIFDGSCGTYPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKR 366
            K+L   P  VGI A +K+ + YSGGIF G CG   NHAV  VG G       + Y I+KNSWG  WGE G++R++R
Sbjct:  346 KSLVISPTVVGI-AVTKELKLYSGGIFTGKCGGELNHAVLLVGEGVDHE-TGMRYWIIKNSWGEDWGENGFLRLQR 419          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = -1
Query:   85 KALANQ-PVSVGIEASSKDFQHYSGGIF-DGSCGTYPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 366
            +A+AN+ PV VG++AS   F  Y  G++ D +C    NH V  +GYG  +  E   Y +VKNSWG  +GE GYIR+ RN    G  C I    S+P
Sbjct:  239 EAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGDLNGKE---YWLVKNSWGSNFGEQGYIRMARN---KGNHCGIASYPSYP 328          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIFDG-SCGTYPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            PVSVGI+AS   F  Y  G++D  SC    NH V  VGYG+    +  DY +VKNSWG  +G+ GYIR+ RN       C I    S+P
Sbjct:  256 PVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGTL---DGKDYWLVKNSWGLNFGDQGYIRMARNN---KNHCGIASYCSYP 338          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = -1
Query:   85 KALANQ-PVSVGIEASSKDFQHYSGGIF-DGSCGTYPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 366
            +A+AN+ PVSVG++A    F  Y  G++ + SC    NH V  VGYG  +  E   Y +VKNSWG  +GE GYIR+ RN    G  C I    S+P
Sbjct:  240 EAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE---YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 329          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIF-DGSCGTYPNHAVTAVGYG-SSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            P++ G+   S  F+ Y  G++ +  C +Y NHAV  VGYG   +  +  +Y ++KNSWG +WG  GY++I ++       CAI  LA +P
Sbjct:  255 PIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNETDGNNYWLIKNSWGKRWGLRGYMKIAKDR---NNHCAIASLAQYP 341          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = -1
Query:   85 PVSVGIEASSKDFQHYSGGIF-DGSCGTYP-NHAVTAVGYG-SSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            PVS  I+AS   F+ YSGG++ + +C +Y  NHAV  VGYG   +  +  +Y ++KNSWG +WG  G+++I ++       C I   ASFP
Sbjct:  244 PVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNETDGNNYWLIKNSWGEEWGINGFMKIAKDR---NNHCGIASQASFP 331          
The following BLAST results are available for this feature:
BLAST of DT214535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CATK_RABIT6.061e-1347.78Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_PIG6.061e-1347.78Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
CATL_SARPE1.034e-1244.33Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATK_CANFA1.034e-1246.67Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CYSP_THEAN2.303e-1248.68Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CATS_SAIBB2.303e-1242.71Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_MOUSE2.303e-1244.94Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATS_HUMAN2.303e-1243.75Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATQ_RAT3.008e-1236.67Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATJ_RAT3.008e-1240.66Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_13B10_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-13B10-C20-1-6.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214535 ID=DT214535; Name=DT214535; organism=Citrus sinensis; type=EST; length=369bp
CATTCATTGAANGCACAAGATATTATTTTTAGTCATAACTGAAGGCAAAC
ATACTATACACAGTTAAGTGGTCTTGAACTTGATGGGGAATGAAGCCAAC
TTGTTGATAGCACATAGGCCACCAGGTAATCCGGTGTTTCTCTTAATCCT
GATGTAGCCTCCCTCTCCCCATTTGGGTCCCCATGAATTTTTGACAATTA
TGTAATCCACTGCCTCCGGTGAAGAAGAAGATCCATACCCAACTGCTGTC
ACTGCGTGATTGGGATATGTTCCACAGGAGCCGTCGAATATACCCCCGCT
GTAATGTTGGAAATCCTTGCTAGAAGCCTCAATGCCGACGCTAACGGGCT
GGTTCGCCAGTGCTTTCAA
back to top