DT214535

Overview
NameDT214535
Unique NameDT214535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5318 contig Csv1_Contig5318:336..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = -1
Query:   94 LKALANQPVSVGIEASSKDFQHYSGGIFDGSCGTYP-------NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLA 369
            L+ + + P++V  E    DF HY  GI+  +  + P       NHAV  VGYG       +DY IVKNSWG +WGE GY RI+R T      CAI  +A
Sbjct:  361 LELVKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVT-GLDYWIVKNSWGSQWGESGYFRIRRGT----DECAIESIA 453          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = -1
Query:   82 QPVSVGIEASSKDFQHYSGGIFDGS-CGTYP---NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFPI 351
            +PVSV  +     F+ Y  G++    CGT P   NHAV AVGYG  +    V Y ++KNSWG  WG+ GY +++    +   +CAI   AS+P+
Sbjct:  274 RPVSVAFQVID-GFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENG---VPYWLIKNSWGADWGDNGYFKME----MGKNMCAIATCASYPV 359          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 43/107 (40.19%), Postives = 55/107 (51.40%), Query Frame = -1
Query:   82 PVSVGIEASSKDFQHYSGGIF-DGSCGTYP-NHAVTAVGYGSSS----------------SPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFPI 348
            PVSV I+AS + FQ Y+ GI+ +  C +   +H V AVGYGS S                +  + +Y IVKNSWG  WG  GYI + RN       C I   ASFP+
Sbjct:  240 PVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRNR---DNNCGIASSASFPV 343          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = -1
Query:   85 LKALANQ-PVSVGIEASSKDFQHYSGGI-FDGSCGTYP-NHAVTAVGYG-SSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 369
            +KA+A   P+SV ++A    FQ Y  GI F+  C +   +H V  VGYG   ++     Y +VKNSWGP+WG  GY++I ++       C I   AS+P
Sbjct:  237 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 332          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = -1
Query:   82 PVSVGIEASSKDFQHYSGGIFDG-SCGTYP---NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFPI 348
            PVS   E + +DF  Y  G++   SC   P   NHAV AVGYG  +    + Y IVKNSWG +WGE GY  I+R       +C +   AS+PI
Sbjct:  246 PVSFAFEVT-EDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNG---LLYWIVKNSWGSQWGENGYFLIERGK----NMCGLAACASYPI 330          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = -1
Query:   94 LKALANQPVSVGIEASSKDFQHYSGGIFDGSCGTYP-------NHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLA 369
            L+ +   P++V  E    DF HY  G++  +    P       NHAV  VGYG+ ++   +DY IVKNSWG  WGE GY RI+R T      CAI  +A
Sbjct:  362 LELVHQGPMAVAFEVYD-DFLHYRKGVYHHTGLRDPFNPFELTNHAVLLVGYGTDAA-SGLDYWIVKNSWGTSWGENGYFRIRRGT----DECAIESIA 454          
BLAST of DT214535 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = -1
Query:   85 PVSVGIE-ASSKDFQHYSGGIFDG-SCGTYPNHAVTAVGYGSSSSPEAVDYIIVKNSWGPKWGEGGYIRIKRNTGLPGGLCAINKLASFP 348
            PVSVGI+ AS   F  Y  G++D  SC    NH V  VGYG+    +  DY +VKNSWG  +G+ GYIR+ RN       C I    S+P
Sbjct:  245 PVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGTL---DGKDYWLVKNSWGLHFGDQGYIRMARNN---KNHCGIASYCSYP 328          
The following BLAST results are available for this feature:
BLAST of DT214535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CATC_RAT4.343e-1141.41Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
ALEU_HORVU4.343e-1139.36Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP5_DICDI5.673e-1140.19Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATL2_HUMAN5.673e-1138.38Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATH_MOUSE7.409e-1143.01Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATC_BOVIN7.409e-1140.40Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATS_RAT9.676e-1144.44Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13B10_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-13B10-C20-1-6.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214535 ID=DT214535; Name=DT214535; organism=Citrus sinensis; type=EST; length=369bp
CATTCATTGAANGCACAAGATATTATTTTTAGTCATAACTGAAGGCAAAC
ATACTATACACAGTTAAGTGGTCTTGAACTTGATGGGGAATGAAGCCAAC
TTGTTGATAGCACATAGGCCACCAGGTAATCCGGTGTTTCTCTTAATCCT
GATGTAGCCTCCCTCTCCCCATTTGGGTCCCCATGAATTTTTGACAATTA
TGTAATCCACTGCCTCCGGTGAAGAAGAAGATCCATACCCAACTGCTGTC
ACTGCGTGATTGGGATATGTTCCACAGGAGCCGTCGAATATACCCCCGCT
GTAATGTTGGAAATCCTTGCTAGAAGCCTCAATGCCGACGCTAACGGGCT
GGTTCGCCAGTGCTTTCAA
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