DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12 Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = -1 Query: 422 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVI 880 S + + + KV+ D ++GRS+G+GFV +G+ E +A++EMNG + R + +G A R QG ++V LD + D+ LR+ F YG I S K+ KG GFV F++ E A +A+ ++NG ++ Sbjct: 212 SAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG---------VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12 Identity = 50/184 (27.17%), Postives = 81/184 (44.02%), Query Frame = -1 Query: 368 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEG--------DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 877 R +V+ +V++D +GRS+G+GFV E A + NG R +R+ A +S G G S G DSSN ++VG L V D L++ FS+ G + K+ +G GFV +++ + +A+ LNG + +S+R+S +QF Sbjct: 110 RAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN-RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12 Identity = 47/160 (29.38%), Postives = 77/160 (48.12%), Query Frame = -1 Query: 431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNG 895 H+TFA+ + ++ + KV D N G SKGYGFV + D +QA+ +N + + + + +G P+K Q E ++ T I+V + TDE+ R F++YG++ S + +G GFV F E A +A+ +LNG Sbjct: 170 HDTFAA-FGNILSCKVAQDEN-GNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDR-------------------QSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: RBM22_DANRE (Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = -1 Query: 380 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK-LNGTVIGKQSVRLSWGRNPA 616 D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K N +I + + + WGR+ A Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNVKWGRSQA 307
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11 Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = -1 Query: 389 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 628 +S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A +L N VI Q ++L+WGR Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.952e-11 Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = -1 Query: 407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHKLNGTVIGKQSV 895 H+TFA+ + ++ + KV D G SKGYGFV + + A+ +NG+ + + + +G +K Q E ++ T I++ +DP+VT+E+ R+ F Q+GEI S + P GK G GFV ++ E+A+ A+ +++ + Q + Sbjct: 156 HDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR-------------------QSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKL 302
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.952e-11 Identity = 46/180 (25.56%), Postives = 88/180 (48.89%), Query Frame = -1 Query: 371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895 +ETF+S + ++ + KV D GRSKGYGFV+F + A+ ++NG+ + + + +G R+ +S S T ++V L +TD++L++ F +YG+I+S + + GFV F + E A A+ K+NG +G+ + + + ++++ Sbjct: 149 YETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR-------------------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 307 HSP 2 Score: 68.9366 bits (167), Expect = 4.348e-11 Identity = 44/174 (25.29%), Postives = 83/174 (47.70%), Query Frame = -1 Query: 371 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-----PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 877 +Y + +A V+ D +G S+ +GFV F + A+ +MNG+ + +G A + S QG + +++ LD +V DE L++ FS+YG + S K+ + +G GFV ++N E A A+ ++NG +IG++ + ++ + +Q Sbjct: 247 KYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQG---------SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11 Identity = 44/168 (26.19%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG V+G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = -1 Query: 389 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 628 +S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A +L N V+ Q ++L+WGR Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG ++G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |