DT214494

Overview
NameDT214494
Unique NameDT214494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6523 contig Csv1_Contig6523:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.932e-12
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = -1
Query:  422 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVI 880
            S + +  + KV+ D ++GRS+G+GFV +G+  E  +A++EMNG   + R + +G A  R                      QG           ++V  LD  + D+ LR+ F  YG I S K+       KG GFV F++ E A +A+ ++NG ++
Sbjct:  212 SAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG---------VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12
Identity = 50/184 (27.17%), Postives = 81/184 (44.02%), Query Frame = -1
Query:  368 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEG--------DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 877
            R  +V+  +V++D  +GRS+G+GFV      E   A  + NG     R +R+ A                   +S G    G  S G        DSSN  ++VG L   V D  L++ FS+ G +   K+         +G GFV +++ +   +A+  LNG  +  +S+R+S       +QF
Sbjct:  110 RAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN-RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12
Identity = 47/160 (29.38%), Postives = 77/160 (48.12%), Query Frame = -1
Query:  431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNG 895
            H+TFA+ + ++ + KV  D N G SKGYGFV +  D   +QA+  +N +  + + + +G   P+K                     Q    E  ++ T I+V  +    TDE+ R  F++YG++ S  +        +G GFV F   E A +A+ +LNG
Sbjct:  170 HDTFAA-FGNILSCKVAQDEN-GNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDR-------------------QSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: RBM22_DANRE (Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  380 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK-LNGTVIGKQSVRLSWGRNPA 616
            D S TT+++GGL  NVTD +LR  F Q+GEI ++ I   + C F+QFA R+ AE A  K  N  +I  + + + WGR+ A
Sbjct:  228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNVKWGRSQA 307          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  389 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 628
            +S  D S  T++VGGL+  + ++D+R  F  +GEI S++I   K C FV + +RE AE+A  +L N  VI  Q ++L+WGR
Sbjct:  220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGR 300          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.952e-11
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = -1
Query:  407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHKLNGTVIGKQSV 895
            H+TFA+ + ++ + KV  D   G SKGYGFV +      + A+  +NG+  + + + +G    +K                     Q    E  ++ T I++  +DP+VT+E+ R+ F Q+GEI S  +   P GK  G GFV ++  E+A+ A+ +++   +  Q +
Sbjct:  156 HDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR-------------------QSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKL 302          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.952e-11
Identity = 46/180 (25.56%), Postives = 88/180 (48.89%), Query Frame = -1
Query:  371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895
            +ETF+S + ++ + KV  D   GRSKGYGFV+F  +     A+ ++NG+  + + + +G    R+                        +S    S T ++V  L   +TD++L++ F +YG+I+S  +        +  GFV F + E A  A+ K+NG  +G+  + +   +  ++++
Sbjct:  149 YETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR-------------------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 307          

HSP 2 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 44/174 (25.29%), Postives = 83/174 (47.70%), Query Frame = -1
Query:  371 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-----PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 877
            +Y  + +A V+ D  +G S+ +GFV F      + A+ +MNG+      + +G A  +                S     QG         + +++  LD +V DE L++ FS+YG + S K+      + +G GFV ++N E A  A+ ++NG +IG++ + ++  +    +Q
Sbjct:  247 KYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQG---------SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 410          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 44/168 (26.19%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG V+G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  389 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 628
            +S  D S  T++VGGL+  V ++D+R  F  +GEI S++I   K C FV +  RE AE+A  +L N  V+  Q ++L+WGR
Sbjct:  220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGR 300          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG ++G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EPABA_XENLA3.932e-1229.94Embryonic polyadenylate-binding protein A OS=Xenop... [more]
ROC2_NICPL5.136e-1227.1731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP_CHAGB5.136e-1229.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM22_DANRE8.760e-1243.75Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=r... [more]
C3H4_ARATH1.144e-1141.98Zinc finger CCCH domain-containing protein 4 OS=Ar... [more]
PABP_ASPCL1.952e-1127.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH1.952e-1125.56Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP5_MACMU2.549e-1126.19Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
C3H25_ARATH2.549e-1141.98Zinc finger CCCH domain-containing protein 25 OS=A... [more]
PABP5_PONPY3.329e-1125.60Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_18F08_b2 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 Citrus sinensis cDNA clone UCRCS07-18F08-L16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bp
TTAGTTCTAGACAATAATAAATCCAATCCCTAGAAACTACCTCAGGTCGT
CATAATTCAATTCCGCTCCACAATGGACGGCATTTTATAAGAATTACTAC
AGAACCAAGAGACTACCGAAGATCAGGCACATTTGCCCTTTCTAGCGTGA
TAACGTTTAAATTTCTAGAGCTATACGTATTCTCTCCCGTGCAGTTACCT
CAGCTTACTTGTTGTTGGTGGCTGCCATACACAGGGTAAGCCCCATAGGC
CGCAGCTGCTGCAGCGTACATGCTTGGGTCATTTGGTGGCGGAATAGCAT
ACCCATAACCATCATAAACTTGCCCTCCATAGTATGCCCCACTCCATTGA
TTGCCATAATCTGCCCTAAACTGCTTATTTGCTGGGTTGCGCCCCCAAGA
AAGACGCACACTTTGCTTGCCAATTACTGTCCCATTCAACTTATGCAGTG
CTTCCTCAGCATTCTCTCTGTTGGCAAATTGTACGAATCCGCATCCTTTC
CCGACTGGTATTTTAACCGAGGCTATTTCGCCATACTGAGAGAAAGGTTG
TCGTAGATCTTCATCTGTGACATTAGGGTCAAGGCCACCAACAAATATTG
TTGTGTTTGAAGAGTCTCCTTCAGATTGAGGGCCTTGGCCTGGGGCACCA
TTTGACGCATACCCTCCTTGAGAAGAGTATTGCTGTTGATAACCAGAGGA
CTTCCTTGGAGTTGCAGCACCAATACGCATAGGCCTGCTTGAACAATAGA
CACCATTCATTTCAGTCATGGCCTGGGACCTCTCATTATCATCTCCAAAC
CTTACAAAACCATAACCTTTTGATCGACCAGTATTGGCATCAAAGACAAC
TTTTGCTGCTTTAACAGAAGGATATCTACTAGCAAAAGTTTCATG
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