DT214494

Overview
NameDT214494
Unique NameDT214494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6523 contig Csv1_Contig6523:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG ++G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG ++G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG ++G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11
Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874
            Y   ++ KV+ DA+ G+SKG+GFVR+       +A+ +++G     + + +G A  +  +                +  PG             I++  LD  + DE L++ FS +G I+  K+ +    GKG G V F++ E A +A+ ++NG ++G + + ++ G+
Sbjct:  222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 48/158 (30.38%), Postives = 74/158 (46.84%), Query Frame = -1
Query:  419 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIG 880
            S++  + + KV+ D N+G S+ +GFV F    E  +A+  MNG   S R +  G A  R                      QG           ++V  LD ++ D+ LR+ FS YG I S K+       KG GFV F++ E A +A+ ++NG ++G
Sbjct:  212 SQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQG---------VNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 47/173 (27.17%), Postives = 80/173 (46.24%), Query Frame = -1
Query:  371 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 877
            +Y    + KV+ D N G+SKG+GFV F    +  +A+ EMNG   + + M +G A  +                      QG           ++V  LD  + DE LR+ F  +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  213 KYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          

HSP 2 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 50/180 (27.78%), Postives = 85/180 (47.22%), Query Frame = -1
Query:  371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895
            ++TF S + ++ + KVV D N   SKGYGFV F       +A+ +MNG+  + R + +G    RK              A  GA  +          T +++     ++ DE L++ F +YG   SVK+        KG GFV F   E+A++A+ ++NG  +  +S+ +   +    +Q
Sbjct:  116 YDTF-SAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK-----------EREAELGARAK--------EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQ 273          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -1
Query:  347 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQ 616
            D S  T+++GGLD  VT++DLR  F  +GEI ++++ + + C FV +  RE AE+A  +L N  VI    ++L WG+  A K    + G Q
Sbjct:  224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGKPQAPKPEEDEAGRQ 314          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_PONAB (U2-associated protein SR140 OS=Pongo abelii GN=SR140 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634
            G    GD S T +++G ++P + +E L Q F ++G +ASVKI            + CGFV F NR +AE AL  LNG +I    ++L WG+
Sbjct:  263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_HUMAN (U2-associated protein SR140 OS=Homo sapiens GN=SR140 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634
            G    GD S T +++G ++P + +E L Q F ++G +ASVKI            + CGFV F NR +AE AL  LNG +I    ++L WG+
Sbjct:  264 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 47/173 (27.17%), Postives = 80/173 (46.24%), Query Frame = -1
Query:  374 VKAAKVVFDANT-GRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANK 865
            +++ K+V D  T G+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG       + + + +  NP+ K
Sbjct:   92 IESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237          
The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PABP5_PANTR3.329e-1125.60Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_HYLLA3.329e-1125.60Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN3.329e-1125.60Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO3.329e-1125.60Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PAP1L_HUMAN4.348e-1130.38Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABPA_XENLA4.348e-1127.17Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
C3H49_ORYSJ4.348e-1138.46Zinc finger CCCH domain-containing protein 49 OS=O... [more]
SR140_PONAB5.678e-1138.46U2-associated protein SR140 OS=Pongo abelii GN=SR1... [more]
SR140_HUMAN5.678e-1138.46U2-associated protein SR140 OS=Homo sapiens GN=SR1... [more]
ELAV2_XENLA5.678e-1127.17ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_18F08_b2 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 Citrus sinensis cDNA clone UCRCS07-18F08-L16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bp
TTAGTTCTAGACAATAATAAATCCAATCCCTAGAAACTACCTCAGGTCGT
CATAATTCAATTCCGCTCCACAATGGACGGCATTTTATAAGAATTACTAC
AGAACCAAGAGACTACCGAAGATCAGGCACATTTGCCCTTTCTAGCGTGA
TAACGTTTAAATTTCTAGAGCTATACGTATTCTCTCCCGTGCAGTTACCT
CAGCTTACTTGTTGTTGGTGGCTGCCATACACAGGGTAAGCCCCATAGGC
CGCAGCTGCTGCAGCGTACATGCTTGGGTCATTTGGTGGCGGAATAGCAT
ACCCATAACCATCATAAACTTGCCCTCCATAGTATGCCCCACTCCATTGA
TTGCCATAATCTGCCCTAAACTGCTTATTTGCTGGGTTGCGCCCCCAAGA
AAGACGCACACTTTGCTTGCCAATTACTGTCCCATTCAACTTATGCAGTG
CTTCCTCAGCATTCTCTCTGTTGGCAAATTGTACGAATCCGCATCCTTTC
CCGACTGGTATTTTAACCGAGGCTATTTCGCCATACTGAGAGAAAGGTTG
TCGTAGATCTTCATCTGTGACATTAGGGTCAAGGCCACCAACAAATATTG
TTGTGTTTGAAGAGTCTCCTTCAGATTGAGGGCCTTGGCCTGGGGCACCA
TTTGACGCATACCCTCCTTGAGAAGAGTATTGCTGTTGATAACCAGAGGA
CTTCCTTGGAGTTGCAGCACCAATACGCATAGGCCTGCTTGAACAATAGA
CACCATTCATTTCAGTCATGGCCTGGGACCTCTCATTATCATCTCCAAAC
CTTACAAAACCATAACCTTTTGATCGACCAGTATTGGCATCAAAGACAAC
TTTTGCTGCTTTAACAGAAGGATATCTACTAGCAAAAGTTTCATG
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