DT214494

Overview
NameDT214494
Unique NameDT214494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6523 contig Csv1_Contig6523:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = -1
Query:  371 ETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 892
            E F    P++ + KV+ D  +G+SKG+GFV F    +  +A+ EMNG   + + + +G A  +                      QG           ++V  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  209 ELFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 48/178 (26.97%), Postives = 84/178 (47.19%), Query Frame = -1
Query:  371 ETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 892
            E F    P++ + KV+ D  +G+SKG+GFV F    +  +A+ EMNG   + + + +G A  +                      QG           ++V  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  209 ELFGKFGPAL-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_MOUSE (U2-associated protein SR140 OS=Mus musculus GN=Sr140 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634
            G    GD S T +++G ++P + +E L Q F ++G +ASVKI            + CGFV F +R +AE AL  LNG +I    ++L WGR
Sbjct:  264 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMSRRDAERALKNLNGKMIMSFEMKLGWGR 354          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 45/168 (26.79%), Postives = 80/168 (47.62%), Query Frame = -1
Query:  407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 895
            H+TFA+ + ++ + KV  D   G SKGYGFV +      + A+  +NG+  + + + +G    +K                     Q    E  ++ T I++  +DP V DE+ R+ F ++GEI S  +        +G GFV F+  E+A+ A+ ++N   +  Q +
Sbjct:  147 HDTFAA-FGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR-------------------QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKL 293          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859
            + KV+ D  +G+SKG+GFV F    +  +A+ EMNG   + + + +G A  +                      QG           ++V  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859
            + KV+ D  +G+SKG+GFV F    +  +A+ EMNG   + + + +G A  +                      QG           ++V  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  371 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 859
            + KV+ D  +G+SKG+GFV F    +  +A+ EMNG   + + + +G A  +                      QG           ++V  LD  + DE LR+ FS +G I S K+ +     KG GFV F++ E A +A+ ++NG ++  + + ++  +    +Q
Sbjct:  219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PABP1_RAT7.416e-1126.97Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE7.416e-1126.97Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
SR140_MOUSE9.685e-1138.46U2-associated protein SR140 OS=Mus musculus GN=Sr1... [more]
PABP_EMENI9.685e-1126.79Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB9.685e-1126.95Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN9.685e-1126.95Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN9.685e-1126.95Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_18F08_b2 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 Citrus sinensis cDNA clone UCRCS07-18F08-L16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bp
TTAGTTCTAGACAATAATAAATCCAATCCCTAGAAACTACCTCAGGTCGT
CATAATTCAATTCCGCTCCACAATGGACGGCATTTTATAAGAATTACTAC
AGAACCAAGAGACTACCGAAGATCAGGCACATTTGCCCTTTCTAGCGTGA
TAACGTTTAAATTTCTAGAGCTATACGTATTCTCTCCCGTGCAGTTACCT
CAGCTTACTTGTTGTTGGTGGCTGCCATACACAGGGTAAGCCCCATAGGC
CGCAGCTGCTGCAGCGTACATGCTTGGGTCATTTGGTGGCGGAATAGCAT
ACCCATAACCATCATAAACTTGCCCTCCATAGTATGCCCCACTCCATTGA
TTGCCATAATCTGCCCTAAACTGCTTATTTGCTGGGTTGCGCCCCCAAGA
AAGACGCACACTTTGCTTGCCAATTACTGTCCCATTCAACTTATGCAGTG
CTTCCTCAGCATTCTCTCTGTTGGCAAATTGTACGAATCCGCATCCTTTC
CCGACTGGTATTTTAACCGAGGCTATTTCGCCATACTGAGAGAAAGGTTG
TCGTAGATCTTCATCTGTGACATTAGGGTCAAGGCCACCAACAAATATTG
TTGTGTTTGAAGAGTCTCCTTCAGATTGAGGGCCTTGGCCTGGGGCACCA
TTTGACGCATACCCTCCTTGAGAAGAGTATTGCTGTTGATAACCAGAGGA
CTTCCTTGGAGTTGCAGCACCAATACGCATAGGCCTGCTTGAACAATAGA
CACCATTCATTTCAGTCATGGCCTGGGACCTCTCATTATCATCTCCAAAC
CTTACAAAACCATAACCTTTTGATCGACCAGTATTGGCATCAAAGACAAC
TTTTGCTGCTTTAACAGAAGGATATCTACTAGCAAAAGTTTCATG
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