DT214489

Overview
NameDT214489
Unique NameDT214489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8653 contig Csv1_Contig8653:237..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            P D G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + GI      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   76 PSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 69/193 (35.75%), Postives = 95/193 (49.22%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     DPI            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22
Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL  GRLAML+  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22
Identity = 71/183 (38.80%), Postives = 98/183 (53.55%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++S WAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   15 PGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 193          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22
Identity = 70/193 (36.27%), Postives = 96/193 (49.74%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+++P +N
Sbjct:   54 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNN 232          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 69/194 (35.57%), Postives = 96/194 (49.48%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI-INVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE  K Y + E++++RWA+LG +G+L PE+  T  G+    P W+ AG         +Y  S + +          ++ +L   +E  R      P     DP+            YPG  F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP +NL  H++DP  N
Sbjct:   64 PGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTN 243          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 69/185 (37.30%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 70/185 (37.84%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:   46 PGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVAN 224          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 70/183 (38.25%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNN 253          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 71/193 (36.79%), Postives = 96/193 (49.74%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++ P +N
Sbjct:   72 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNN 250          
The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_PETSP1.409e-2239.34Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_GOSHI1.409e-2235.75Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_MAIZE1.840e-2239.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA1.840e-2238.80Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SOYBN1.840e-2236.27Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLMO2.403e-2235.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP2.403e-2237.30Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.403e-2237.84Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB25_NICPL2.403e-2238.25Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN2.403e-2236.79Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_023A07_T72 Ruby Orange Developing Flower cDNA Library UCRCS04-2 Citrus sinensis cDNA clone UCRCS04_023_VN_A07_rd, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bp
ATTGAGGGTTTCCATGTTTACATTGATGCTCAAATCTCACTCAAAAACTA
CAGATTCATGGTTACAAAAGAAAGAAACAGGATCCCGAATTGCCAATCCA
TCTTTGATTAATTACCACTAAGTGTCTGGACGATGGTGTTGTGCCATGGG
TCAGAGATATGTTGCAGGAGGTTTTCAAATGGCCCTTTGCCTGTCACATT
GTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATCTCCCATTGG
CAAGCTCCTTCTCCTTTGCCTCATCAGTGGGTGCAAAGTTGAGTGGGTTG
AAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCTGTACTGCTT
GAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGTCTTGCCATC
TTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACGAAAAGGGTC
GATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCATTGAGGAAC
ATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACATTCCAACAA
CACCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGCACATACCAC
TTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAATCCATTGTC
ACCGGGGAGGCTAAAACCATCAAGAGATTTTGTAAATGTTAGATTTTTAG
TAGCATGAAATGATAGCAACACTTTGTTTACAAAATCAGGAGGATATAGA
GAATTTGGTATTAGAAGTAATGTAAAATATGACGTGACATTGTTCTAAAC
TGATCGCATATATGCATGTGACATCAGTTGTTGACATGACTTTGAGGGGG
TTTTGTTTGAGTTAAGTTTTGTACCTGCCGTTGA
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