DT214489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21 Identity = 68/183 (37.16%), Postives = 95/183 (51.91%), Query Frame = -1 Query: 138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656 PGD G+D GL+ DP + E+++ RW MLG +G + PE+F + G+ W+ AG ++ F ++ L H I W + G+V ++ P EV YPGG F+PL A EA + KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 75 PGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20 Identity = 66/191 (34.55%), Postives = 90/191 (47.12%), Query Frame = -1 Query: 138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVE------IRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656 PGD G+D GL+ DPE K Y + EL+++RWAMLG +G PE+ K G W+ AG +Y + S + + V+ I ++ P DP+ YPG F+PL A E K KE+ NGRLA + GF VQ VTGKGP +NL H+++P N Sbjct: 62 PGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVN 240
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20 Identity = 73/195 (37.44%), Postives = 100/195 (51.28%), Query Frame = -1 Query: 180 NLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 695 NL + LDG SLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S TL + IL +VE +RW D +P S + + + ++ E GYPGG F+PL A T + K E+ + RLAMLA L F + GK P Sbjct: 64 NLVDPEWLDG-SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTP 250
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20 Identity = 83/225 (36.89%), Postives = 102/225 (45.33%), Query Frame = -1 Query: 138 YPPDFVNKVLLSFHATKNLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 746 Y PD V K L F A T S PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +G+ P W+ AG +Y + S L V+ F +L VE R + G N YPGG F+PL A E K KE+ NGRLAM + GF VQ VTGKGP ENL H+ DP N Sbjct: 51 YGPDRV-KYLGPFSAQ-----TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVAN 255
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.837e-20 Identity = 84/225 (37.33%), Postives = 104/225 (46.22%), Query Frame = -1 Query: 138 YPPDFVNKVLLSFHATKNLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 746 Y PD V K L F A T S PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K ++ P W+ AG +Y + S L V+ F +L VE R + G N YPGG F+PL A PT E K KE+ NGRLAM + GF VQ VTGKGP ENLL H+ +P N Sbjct: 48 YGPDRV-KYLGPFSAQ-----TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL--------------YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 252
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.011e-20 Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = -1 Query: 138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656 PGD G+D ++ DPE + E+++ RWAMLG +G + PE+ K G+ W+ AG A+ F+ + L H I W V + + Y + +G PGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 75 PGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG-AQIFSEGGLDYAGNPNLIHAQSILAIWAC-----QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 253
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20 Identity = 67/184 (36.41%), Postives = 90/184 (48.91%), Query Frame = -1 Query: 138 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 629 GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.236e-19 Identity = 77/247 (31.17%), Postives = 102/247 (41.30%), Query Frame = -1 Query: 111 LDGFSLPGDNGFDPLGLAEDPENLKWYV-------------------------------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 674 LDG SL GD GFDP GL + E L++ + + EL++ RWAML +G L E T + W DAGK E SS TL IE ++ Y+E +R ++ + + YPGG F+PL A E + E+ + RLAM+AFLGF VQ TGKGP N H+SDP H TI+ T S + Sbjct: 68 LDG-SLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18 Identity = 71/195 (36.41%), Postives = 99/195 (50.77%), Query Frame = -1 Query: 180 NLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 695 NL + LDG SLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S +L + +L +VE +RW D + S + D + ++ E GYPGG F+PL A T + K E+ + RLAMLA L F + GK P Sbjct: 64 NLVDPEWLDG-SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTP 250
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18 Identity = 75/247 (30.36%), Postives = 101/247 (40.89%), Query Frame = -1 Query: 111 LDGFSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 674 LDG SL GD GFDP GL + E L++ + + EL++ RWAML +G + E T + W DAGK E SS TL IE ++ Y+E +R ++ + + YPGG F+PL A K + E+ + RLAM+ FLGF VQ TGKGP N H+SDP H TI+ T S + Sbjct: 65 LDG-SLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287 The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bpback to top |