DT214489

Overview
NameDT214489
Unique NameDT214489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8653 contig Csv1_Contig8653:237..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 68/183 (37.16%), Postives = 95/183 (51.91%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DP       + E+++ RW MLG +G + PE+F + G+      W+ AG ++ F      ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    + KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   75 PGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20
Identity = 66/191 (34.55%), Postives = 90/191 (47.12%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVE------IRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D  GL+ DPE  K Y + EL+++RWAMLG +G   PE+  K G       W+ AG         +Y  + S +     +    V+      I  ++    P     DP+            YPG  F+PL  A       E K KE+ NGRLA  +  GF VQ  VTGKGP +NL  H+++P  N
Sbjct:   62 PGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVN 240          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20
Identity = 73/195 (37.44%), Postives = 100/195 (51.28%), Query Frame = -1
Query:  180 NLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 695
            NL   + LDG SLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  TL   + IL  +VE +RW D  +P S + +         + ++    E GYPGG  F+PL  A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:   64 NLVDPEWLDG-SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTP 250          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.938e-20
Identity = 83/225 (36.89%), Postives = 102/225 (45.33%), Query Frame = -1
Query:  138 YPPDFVNKVLLSFHATKNLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 746
            Y PD V K L  F A      T S      PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K +G+    P W+ AG         +Y  +       S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+ DP  N
Sbjct:   51 YGPDRV-KYLGPFSAQ-----TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVAN 255          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.837e-20
Identity = 84/225 (37.33%), Postives = 104/225 (46.22%), Query Frame = -1
Query:  138 YPPDFVNKVLLSFHATKNLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 746
            Y PD V K L  F A      T S      PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K   ++   P W+ AG         +Y  +       S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A  PT   E K KE+ NGRLAM +  GF VQ  VTGKGP ENLL H+ +P  N
Sbjct:   48 YGPDRV-KYLGPFSAQ-----TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL--------------YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.011e-20
Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = -1
Query:  138 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 656
            PGD G+D   ++ DPE      + E+++ RWAMLG +G + PE+  K G+      W+ AG A+ F+     +     L H   I   W        V    + + Y +    +G       PGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   75 PGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG-AQIFSEGGLDYAGNPNLIHAQSILAIWAC-----QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 253          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 67/184 (36.41%), Postives = 90/184 (48.91%), Query Frame = -1
Query:  138 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 629
            GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.236e-19
Identity = 77/247 (31.17%), Postives = 102/247 (41.30%), Query Frame = -1
Query:  111 LDGFSLPGDNGFDPLGLAEDPENLKWYV-------------------------------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 674
            LDG SL GD GFDP GL +  E L++ +                                           + EL++ RWAML  +G L  E  T +       W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A   E   +    E+ + RLAM+AFLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:   68 LDG-SLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18
Identity = 71/195 (36.41%), Postives = 99/195 (50.77%), Query Frame = -1
Query:  180 NLTFTKSLDGFSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 695
            NL   + LDG SLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  +L   + +L  +VE +RW D  +  S + D         + ++    E GYPGG  F+PL  A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:   64 NLVDPEWLDG-SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTP 250          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18
Identity = 75/247 (30.36%), Postives = 101/247 (40.89%), Query Frame = -1
Query:  111 LDGFSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 674
            LDG SL GD GFDP GL +  E L++                                           + + EL++ RWAML  +G +  E  T +       W DAGK E    SS           TL  IE ++  Y+E +R  ++ +   +                 YPGG  F+PL  A     K +    E+ + RLAM+ FLGF VQ   TGKGP  N   H+SDP H TI+ T S +
Sbjct:   65 LDG-SLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB21_PETSP7.731e-2137.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE1.722e-2034.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4A_SOLLC2.938e-2037.44Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB23_HORVU2.938e-2036.89Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC3.837e-2037.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_PINTH5.011e-2036.22Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_SOYBN8.548e-2036.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4A_ARATH7.236e-1931.17Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_SOLLC1.234e-1836.41Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4B_ARATH3.591e-1830.36Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_023A07_T72 Ruby Orange Developing Flower cDNA Library UCRCS04-2 Citrus sinensis cDNA clone UCRCS04_023_VN_A07_rd, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bp
ATTGAGGGTTTCCATGTTTACATTGATGCTCAAATCTCACTCAAAAACTA
CAGATTCATGGTTACAAAAGAAAGAAACAGGATCCCGAATTGCCAATCCA
TCTTTGATTAATTACCACTAAGTGTCTGGACGATGGTGTTGTGCCATGGG
TCAGAGATATGTTGCAGGAGGTTTTCAAATGGCCCTTTGCCTGTCACATT
GTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATCTCCCATTGG
CAAGCTCCTTCTCCTTTGCCTCATCAGTGGGTGCAAAGTTGAGTGGGTTG
AAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCTGTACTGCTT
GAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGTCTTGCCATC
TTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACGAAAAGGGTC
GATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCATTGAGGAAC
ATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACATTCCAACAA
CACCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGCACATACCAC
TTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAATCCATTGTC
ACCGGGGAGGCTAAAACCATCAAGAGATTTTGTAAATGTTAGATTTTTAG
TAGCATGAAATGATAGCAACACTTTGTTTACAAAATCAGGAGGATATAGA
GAATTTGGTATTAGAAGTAATGTAAAATATGACGTGACATTGTTCTAAAC
TGATCGCATATATGCATGTGACATCAGTTGTTGACATGACTTTGAGGGGG
TTTTGTTTGAGTTAAGTTTTGTACCTGCCGTTGA
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