DT214489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.000e-18 Identity = 65/179 (36.31%), Postives = 86/179 (48.04%), Query Frame = -1 Query: 120 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 653 GD GFDP GLA DP+ + AE+ + R AML VVG L+P+ K GI WY+A + A +F + +F ++ N DP YPG F+PLN TD KE E+ NGRLA+ A LGF VQ +V G P NL +H+ P I ++ Sbjct: 21 GDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 171
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14 Identity = 68/223 (30.49%), Postives = 89/223 (39.91%), Query Frame = -1 Query: 180 LDGFSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 674 LDG S+ GD GFDP GL + E L++ + + EL++ RWAMLG +G + E T I W DAGK E SS TL IE ++ Y+E +R + L P + YPGG F+PL A D K E+ + RLAM+AFL F +Q TGKGP Sbjct: 69 LDG-SMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14 Identity = 67/226 (29.65%), Postives = 95/226 (42.04%), Query Frame = -1 Query: 168 NLTFTKSLDGFSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 695 N T + LDG SLPGD GFDPLGL++ E N K V+A EL++ RWAML +G L+ E T + W +AGK E +S + F + + W ++ G ++ P + YPGG+F+PL A DE K E+ + RLAM++F G+ VQ TG+G +L Sbjct: 56 NTTRPEWLDG-SLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12 Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = -1 Query: 117 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 656 P D GFDPL +A DP +E+ ++R +ML +VG ++PE+ K W++ G +S + FIL + + G N D S YPG F+PL T + ++E+ NGRLAM LG Q+ TG+ P NL H ++P I TL+ Sbjct: 177 PADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = -1 Query: 138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = -1 Query: 138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1 Query: 138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1 Query: 138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1 Query: 138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11 Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = -1 Query: 117 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN--PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 656 PGD G+D GL+ PE + E+++SR AM +G + PE+ + +G W+ AG A+ F+ ++ L H I K G+V I + + YPG F+ L A EA K KEL NGRLAM + GF VQ V+ K ENL H+ +N + ++ Sbjct: 78 PGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262 The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bpback to top |