DT214489

Overview
NameDT214489
Unique NameDT214489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8653 contig Csv1_Contig8653:237..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.000e-18
Identity = 65/179 (36.31%), Postives = 86/179 (48.04%), Query Frame = -1
Query:  120 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 653
            GD GFDP GLA DP+  +    AE+ + R AML VVG L+P+   K GI     WY+A + A        +F   + +F         ++      N DP             YPG  F+PLN   TD  KE E+ NGRLA+ A LGF VQ +V G  P  NL +H+  P    I  ++
Sbjct:   21 GDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 171          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 68/223 (30.49%), Postives = 89/223 (39.91%), Query Frame = -1
Query:  180 LDGFSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 674
            LDG S+ GD GFDP GL +  E L++                                           + + EL++ RWAMLG +G +  E  T I       W DAGK E    SS           TL  IE ++  Y+E +R  +                 L P +  YPGG F+PL  A      D  K  E+ + RLAM+AFL F +Q   TGKGP
Sbjct:   69 LDG-SMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 67/226 (29.65%), Postives = 95/226 (42.04%), Query Frame = -1
Query:  168 NLTFTKSLDGFSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 695
            N T  + LDG SLPGD GFDPLGL++  E               N K  V+A                              EL++ RWAML  +G L+ E  T +       W +AGK E   +S     + F +   +    W ++   G       ++     P +  YPGG+F+PL  A  DE      K  E+ + RLAM++F G+ VQ   TG+G   +L
Sbjct:   56 NTTRPEWLDG-SLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = -1
Query:  117 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 656
            P D GFDPL +A DP        +E+ ++R +ML +VG ++PE+  K        W++ G      +S     + FIL        +   +  G  N D      S       YPG  F+PL    T +  ++E+ NGRLAM   LG   Q+  TG+ P  NL  H ++P    I  TL+
Sbjct:  177 PADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = -1
Query:  138 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 317
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of DT214489 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 59/187 (31.55%), Postives = 86/187 (45.99%), Query Frame = -1
Query:  117 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN--PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 656
            PGD G+D  GL+  PE      + E+++SR AM   +G + PE+ + +G       W+ AG A+ F+     ++    L H   I      K    G+V    I +       +  YPG  F+ L  A   EA    K KEL NGRLAM +  GF VQ  V+ K   ENL  H+    +N  +  ++
Sbjct:   78 PGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262          
The following BLAST results are available for this feature:
BLAST of DT214489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
LH18_EUGGR8.000e-1836.31Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4C_ARATH4.109e-1430.49Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE7.009e-1429.65Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
LH15_EUGGR5.023e-1231.11Light-harvesting complex I LH35 proteins (Fragment... [more]
CB2F_SOLLC5.023e-1257.81Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.023e-1257.81Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC8.568e-1256.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.568e-1256.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.568e-1256.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2_MALDO5.553e-1131.55Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_023A07_T72 Ruby Orange Developing Flower cDNA Library UCRCS04-2 Citrus sinensis cDNA clone UCRCS04_023_VN_A07_rd, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214489 ID=DT214489; Name=DT214489; organism=Citrus sinensis; type=EST; length=884bp
ATTGAGGGTTTCCATGTTTACATTGATGCTCAAATCTCACTCAAAAACTA
CAGATTCATGGTTACAAAAGAAAGAAACAGGATCCCGAATTGCCAATCCA
TCTTTGATTAATTACCACTAAGTGTCTGGACGATGGTGTTGTGCCATGGG
TCAGAGATATGTTGCAGGAGGTTTTCAAATGGCCCTTTGCCTGTCACATT
GTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATCTCCCATTGG
CAAGCTCCTTCTCCTTTGCCTCATCAGTGGGTGCAAAGTTGAGTGGGTTG
AAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCTGTACTGCTT
GAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGTCTTGCCATC
TTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACGAAAAGGGTC
GATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCATTGAGGAAC
ATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACATTCCAACAA
CACCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGCACATACCAC
TTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAATCCATTGTC
ACCGGGGAGGCTAAAACCATCAAGAGATTTTGTAAATGTTAGATTTTTAG
TAGCATGAAATGATAGCAACACTTTGTTTACAAAATCAGGAGGATATAGA
GAATTTGGTATTAGAAGTAATGTAAAATATGACGTGACATTGTTCTAAAC
TGATCGCATATATGCATGTGACATCAGTTGTTGACATGACTTTGAGGGGG
TTTTGTTTGAGTTAAGTTTTGTACCTGCCGTTGA
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