CN189370

Overview
NameCN189370
Unique NameCN189370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189370_ssr274 microsatellite CN189370_ssr274:274..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:780..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  ++ ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  207 PDLVATDSVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 309          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  ++ ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  207 PDLVATDSVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 309          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G+W P+  D  + R P  G   NI+ G   CG G   A+ + + +Y  Y  +L V      P + L C  Q+ F
Sbjct:  148 PDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNV-----APGDNLDCYNQRNF 250          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +A ++F+ A+W WMT  ++ +PSAHD   G W P+  D+   R P FG   NI+ G   C  G    M+N +  Y  Y  +LGV      P   L CA Q+ F
Sbjct:  143 PDLVANDAVVSFKTALWFWMT-AQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGV-----DPGNNLDCANQRPF 245          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +A ++F+ AIW WMT  + ++PS HD  +G W P+  DT + R P +G   NI+ G   CG G  DA  + + +Y  Y D+LG     AG    L C  Q+ F
Sbjct:  157 PDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG-----AGYGSNLDCYNQRNF 259          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  361 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 690
            P+ +  + T++F++A W WMTP +  +PS HD  +G W P+ +D  + R P FG   NI+ G   CGQG    + + +  Y  Y D LGVG         L C  Q+++N
Sbjct:  210 PDLLATDPTISFKSAFWFWMTP-QSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGY-----GNNLDCYNQRSYN 313          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  N T++F+ AIW WMTP + ++PS+HD   G W P+  D+ + R P +G   NI+ G   CG G  + +++ V  Y  Y  + GV      P   L C  Q++F
Sbjct:  217 PDLLSTNPTVSFKTAIWFWMTP-QANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGV-----DPGGNLDCNNQRSF 319          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 38/112 (33.93%), Postives = 53/112 (47.32%), Query Frame = -1
Query:  355 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPN 690
            PE +  +  L+FEAA+W WM P     PS H+   G W P++ D  + R P FG   NI+     C +       N + +YL Y D+L     Q  P + L C  Q+ F  N
Sbjct:  201 PEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDML-----QVDPGDNLYCDNQETFEDN 307          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  ++F+ A+W WMTP +  +PS HD  +G W P+  D  + R P FG   NI+ G   CG+G  + + + +  Y  Y  +LGV      P + L C  Q+ F
Sbjct:  217 PDLVATDPVISFKTALWFWMTP-QSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGV-----TPGDNLDCVNQRWF 319          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  ++F+ A+W WMTP +  +PS HD   G W P+  D  + R P +GT  NI+ G   CG+G    + + +  Y  Y D+ G+G       + L C  Q+ F
Sbjct:  205 PDLVATDPVISFKTALWFWMTP-QSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGY-----GDNLDCYSQRPF 307          
The following BLAST results are available for this feature:
BLAST of CN189370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI3_SOLTU7.198e-1533.94Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU9.400e-1533.94Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIP_TOBAC1.228e-1434.86Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHID_SOLLC1.228e-1435.78Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI8_ORYSJ1.228e-1436.70Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC1.603e-1435.45Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA2.094e-1434.86Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI8_POPTR2.735e-1433.93Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_SOLTU3.572e-1433.03Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_PEA7.958e-1432.11Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189370 ID=CN189370; Name=CN189370; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTAATAAAATATAAGCATATACTTTACAATTCTGCTATT
GAAACACACGAGTGGTTCATGCGGTTCATCATTACATATGTAACCAGATA
TAACGAAGATTTTACAAACCAAATGAATCTCAAATCTACAACGGCAATGA
AGAGGGGCAGACCAATCCACACACTAATTGACCTTGCGCAATATATGAAA
AGATGGAAAAAAAAAAAAAAACTTACAACAAATAGTTTAATTAACCCCAG
TCTTATTGTAATGGTACCCACCTAGAGAGAGAGAGAGAGTCACTCCCACA
ATAATAGCTTGGCTACAATAAACGTCCTCAAGAAGATGCAGCTGAAGGTG
CGGTGTTTGGGTTGAAGGCTTTCTGCTCAGCACAAGAGAGTTCTTCATTA
GGTCCTGCCTGCTCTCGGCCAACACCCAACAGATCAAGGTAATACAAGTA
ATGAGAGACAATGTTGTTCATAGCATCAATATCACCCTGACCGCATACGC
TCTCACCATAGAGGATATTCATTGTGGTACCAAAGTTAGGTCCCCGTTTG
GACAAAGTATCATTCTTGGTGGGCTTCCAGTTGCCAACAAAGGCATCATG
GGCTGAAGGCTGGGATTTCTTGACTGGGGTCATCCACTTCCAAATTGCAG
CCTCAAAGGCAAGGGTAGCATTCTGCTCAATGTATTCGGG
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