CN189370

Overview
NameCN189370
Unique NameCN189370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189370_ssr274 microsatellite CN189370_ssr274:274..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:780..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  +AF+AAIW WMTP +  +PS H   VG W+P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y ++LGV      P   L C  Q++F
Sbjct:  209 PDLVSNDPVIAFKAAIWFWMTP-QSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGV-----NPGGNLDCYNQRSF 311          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +AT++F+ AIW WMTP + ++PS HD   G W P+  DT + R P +G   NI+ G   CG+G    + + + +Y   + ++ V      P + L C  Q+ F
Sbjct:  149 PDLVATDATVSFKTAIWFWMTP-QGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNV-----APGDNLDCYNQRNF 251          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = -1
Query:  355 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPN 690
            P+ +  +AT++F+ A W WMTP +  +PS H    G W P+ +D  + R P +G   NI+ G   CG G  D + + +  Y  Y D+LGV        + L C  Q+ + P+
Sbjct:  215 PDLVASDATVSFKTAFWFWMTP-QSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSY-----GDNLDCYNQRPYPPS 320          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = -1
Query:  361 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 690
            P+ +  +AT++F+ A W WMTP +  +PS H    G W P  ND  + R P +G   NI+ G   CG G    + + +  Y  Y D+LGV     G N  L C  Q+ FN
Sbjct:  219 PDLVASDATVSFKTAFWFWMTP-QSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGV---SYGAN--LDCYNQRPFN 322          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +AT++F+ A W WMTP +  +PS H    G W P+ +D  + R P +G   NI+ G   CG G+ D + + +  Y  Y D+LGV  +       L C  Q+ F
Sbjct:  222 PDLVASDATVSFDTAFWFWMTP-QSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYD-----ANLDCYSQRPF 324          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +AT++F+ AIW WMT  + ++PS HD   G W P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y  +L V      P + L C +Q+ F
Sbjct:  142 PDLVATDATVSFKTAIWFWMT-AQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNV-----APGDNLDCYDQRNF 244          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  ++ ++F++A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G    + + +  +  Y DLLGVG         L C  Q  F
Sbjct:  213 PDLVATDSVISFKSALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGY-----GNNLDCYSQTPF 315          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  ++ ++F++A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G    + + +  +  Y DLLGVG         L C  Q  F
Sbjct:  212 PDLVATDSVISFKSALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGY-----GNNLDCYSQTPF 314          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 38/109 (34.86%), Postives = 54/109 (49.54%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +AT+ F+ AIW WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D+LGVG         L C  Q+ F
Sbjct:  163 PDLVATDATVGFKTAIWFWMT-AQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGY-----GNNLDCYSQRPF 265          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  L+F+ A+W WMTP +  +PS HD   G W+P+  DT + R P +G   N+L G   CG+G    + + +  +  Y  LLGV     G    L C  Q+ F
Sbjct:  140 PDLVATDRVLSFKTALWFWMTP-QAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGV-----GTGNNLDCYNQRPF 242          
The following BLAST results are available for this feature:
BLAST of CN189370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI2_BRANA7.958e-1434.86Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PETHY1.039e-1333.03Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI3_ORYSJ1.039e-1333.04Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ1.039e-1336.36Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ1.039e-1333.94Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.315e-1333.03Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PHAVU3.950e-1332.11Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU3.950e-1332.11Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_HORVU6.737e-1334.8626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIT_CARPA8.799e-1333.94Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189370 ID=CN189370; Name=CN189370; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTAATAAAATATAAGCATATACTTTACAATTCTGCTATT
GAAACACACGAGTGGTTCATGCGGTTCATCATTACATATGTAACCAGATA
TAACGAAGATTTTACAAACCAAATGAATCTCAAATCTACAACGGCAATGA
AGAGGGGCAGACCAATCCACACACTAATTGACCTTGCGCAATATATGAAA
AGATGGAAAAAAAAAAAAAAACTTACAACAAATAGTTTAATTAACCCCAG
TCTTATTGTAATGGTACCCACCTAGAGAGAGAGAGAGAGTCACTCCCACA
ATAATAGCTTGGCTACAATAAACGTCCTCAAGAAGATGCAGCTGAAGGTG
CGGTGTTTGGGTTGAAGGCTTTCTGCTCAGCACAAGAGAGTTCTTCATTA
GGTCCTGCCTGCTCTCGGCCAACACCCAACAGATCAAGGTAATACAAGTA
ATGAGAGACAATGTTGTTCATAGCATCAATATCACCCTGACCGCATACGC
TCTCACCATAGAGGATATTCATTGTGGTACCAAAGTTAGGTCCCCGTTTG
GACAAAGTATCATTCTTGGTGGGCTTCCAGTTGCCAACAAAGGCATCATG
GGCTGAAGGCTGGGATTTCTTGACTGGGGTCATCCACTTCCAAATTGCAG
CCTCAAAGGCAAGGGTAGCATTCTGCTCAATGTATTCGGG
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