CN189370

Overview
NameCN189370
Unique NameCN189370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189370_ssr274 microsatellite CN189370_ssr274:274..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:780..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D+LGVG       + L C  Q+ F
Sbjct:  163 PDLVATDPTVSFKTALWFWMT-AQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGY-----GDNLDCYNQRPF 265          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  ++F+ AIW WMT  + ++PS H+  +G W P+  DT + R P +G   NI+ G+  CG G   A  + +  Y  Y  +L V        E L C  QK F
Sbjct:  148 PDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNV-----PTGENLDCNNQKNF 250          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  + T++F++A W WMTP +  +PS H+  +G W P+ +D  + R P +G   NI+ G   CG+G    + + +  Y  Y D+LGV          L C  Q  F
Sbjct:  213 PDLLSSDPTISFKSAFWFWMTP-QSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSY-----GNNLDCYNQSPF 315          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +A +AF+AAIW WMT  +  +PS H    G W+P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y ++ GV      P   L C  Q++F
Sbjct:  224 PDLVANDAVIAFKAAIWFWMT-AQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGV-----NPGGNLDCYNQRSF 326          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMN-NIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            PE +E +  ++F+ AIW WM P +  +PS H    GNW P+  D  + R P +G   NI+ G   CGQG  +A N + +  Y  Y D LG      G N  L C +Q+ F
Sbjct:  226 PELVETDPVISFKTAIWFWMKP-QSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGT---TYGSN--LDCYQQRPF 329          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D+LGVG         L C  Q+ F
Sbjct:  215 PDLVATDPTVSFKTAMWFWMT-AQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGY-----GNNLDCYSQRPF 317          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  + T++F++A W WMTP +  +PS H+  +G W P+ +D  + R   +G   NI+ G   CG+G    + + +  Y  Y D+LGV          L C  Q  F
Sbjct:  191 PDLLSSDPTISFKSAFWFWMTP-QSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSY-----GNNLDCYNQSPF 293          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            PE +   + +AF+ A+W WMTP + ++PS H   VG ++P   D  + R   FG   NI+ G   C +     +NN +  Y  Y  +LGV     GPN  L C  Q+ F
Sbjct:  188 PEIVANCSDIAFQTALWFWMTP-RDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGV---DVGPN--LDCEHQQPF 290          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 35/109 (32.11%), Postives = 54/109 (49.54%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +A ++F+ A W WMTP +  +PS H+   G W P+  D  + R P FG   NI+ G   CG+G +  + + +  Y  Y D+L V          L C  Q+ F
Sbjct:  203 PDLVATDAVISFKTAFWFWMTP-QSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSY-----GNNLDCNNQRPF 305          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG-DIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  +AF  AIW WMT  +  +PS HD     W P+ +D  S R P +G   NI+ G   CG+G   D   + V +Y  Y D+  VG       + ++C +QK +
Sbjct:  150 PDLVSSDPVVAFRTAIWFWMT-AQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGY-----GDNIACRDQKPY 253          
The following BLAST results are available for this feature:
BLAST of CN189370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIC_SECCE8.799e-1333.03Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SOLLC1.149e-1233.03Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_GOSHI1.501e-1232.11Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIB_ARATH1.960e-1233.03Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI6_POPTR3.343e-1237.27Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_HORVU3.343e-1233.0326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_GOSHI5.703e-1231.19Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI10_ORYSJ5.703e-1234.86Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_VITVI7.448e-1232.11Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI11_ORYSJ7.448e-1232.73Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189370 ID=CN189370; Name=CN189370; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTAATAAAATATAAGCATATACTTTACAATTCTGCTATT
GAAACACACGAGTGGTTCATGCGGTTCATCATTACATATGTAACCAGATA
TAACGAAGATTTTACAAACCAAATGAATCTCAAATCTACAACGGCAATGA
AGAGGGGCAGACCAATCCACACACTAATTGACCTTGCGCAATATATGAAA
AGATGGAAAAAAAAAAAAAAACTTACAACAAATAGTTTAATTAACCCCAG
TCTTATTGTAATGGTACCCACCTAGAGAGAGAGAGAGAGTCACTCCCACA
ATAATAGCTTGGCTACAATAAACGTCCTCAAGAAGATGCAGCTGAAGGTG
CGGTGTTTGGGTTGAAGGCTTTCTGCTCAGCACAAGAGAGTTCTTCATTA
GGTCCTGCCTGCTCTCGGCCAACACCCAACAGATCAAGGTAATACAAGTA
ATGAGAGACAATGTTGTTCATAGCATCAATATCACCCTGACCGCATACGC
TCTCACCATAGAGGATATTCATTGTGGTACCAAAGTTAGGTCCCCGTTTG
GACAAAGTATCATTCTTGGTGGGCTTCCAGTTGCCAACAAAGGCATCATG
GGCTGAAGGCTGGGATTTCTTGACTGGGGTCATCCACTTCCAAATTGCAG
CCTCAAAGGCAAGGGTAGCATTCTGCTCAATGTATTCGGG
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