CN189366

Overview
NameCN189366
Unique NameCN189366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2727 contig Csv1_Contig2727:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.506e-41
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GG C+PP  HFDLSQP++E+IA YK+GI+PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDV +VS+KGSRT WQ MSRNWGQNWQSN
Sbjct:  119 GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSN 212          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQS 682
            GGWCNPP+ HFD+SQPVF++IA +KAGIVPVSYRRV C +KGGIRFTINGHSYFNLVL+TNVGGAGDV AV++K  R+  WQ +SRNWGQNWQS
Sbjct:  155 GGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQS 248          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP++HFDL+ P+F  IA+YKAGIVPVSYRR+PC +KGGIRFTING  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN
Sbjct:  122 GGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSN 215          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP+ HFDL+ P+F  IA+Y+AGIVPVSYRRVPC +KGG+RFTING  YFNLVLITNV GAGD+   S+KG+ T W PMSRNWGQNWQSN
Sbjct:  128 GGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSN 221          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.416e-39
Identity = 70/100 (70.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTD------WQPMSRNWGQNWQSN 685
            GGWCNPP++HFDL++P F +IA++ AGIVPVS+RRV C+RKGG+RFT+NGH+YFNLVL+TNVGGAGDVR++++KGS +       WQPMSRNWGQNWQSN
Sbjct:  119 GGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSN 218          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.849e-39
Identity = 69/94 (73.40%), Postives = 81/94 (86.17%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP++HFDL+ P+F +I  Y+AGIVPVSYRRVPC + GGIRFT+NG  YFNLVL+TNV GAGD+  VS+KGS+TDW  MSRNWGQNWQSN
Sbjct:  126 GGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSN 219          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP+ HFDL+ PVF +IA+Y+AGIVP+SYRRV C + GGIRFTINGH YFNLVLITNV GAGD+   S+KGS+T W  ++RNWGQNWQSN
Sbjct:  124 GGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSN 217          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            AGGWCNPP+ HFD+++P F +IAQ +AG+VPV YRRV C+++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+ WQ MS NWG NWQ+
Sbjct:  113 AGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQN 206          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            AGGWCNPP++HFD+SQP +E IA Y+AGIVPV+YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKGS T W  MSRNWG NWQSN
Sbjct:  114 AGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSN 208          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.948e-38
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK---GSRTDWQPMSRNWGQNWQS 682
            GGWCNPP  HFDLSQP F +IA++++GIVPVSYRRV C RKGG+RFTINGHSYFNLVL++NVGGAGDV AV++K   G +  WQ M+RNWGQNWQS
Sbjct:  126 GGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQS 221          
The following BLAST results are available for this feature:
BLAST of CN189366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA5_ARATH7.506e-4178.72Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA5_ORYSJ3.725e-4077.66Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH4.865e-4075.53Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ8.299e-4074.47Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ1.416e-3970.00Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH1.849e-3973.40Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP16_ARATH3.154e-3972.34Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP11_ORYSJ5.379e-3972.34Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ2.044e-3872.63Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ5.948e-3872.92Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189366 ID=CN189366; Name=CN189366; organism=Citrus sinensis; type=EST; length=685bp
TTTTATTAAGATTTTGGTGACCTGCCATGCAAGCGCACCTGCCATGGCAA
AGGCCGGATGACAAAGAATAATCAGGTCTCAGCCATCTTAATTTCAGGCT
TCTCTGTCCTGACGCATCTCTTACATCCATTATAAAAACCCTCCACAATC
CCGCAATTCACTCCCAATTATGCGGCACAAGCCTACCCGCATGATCAATT
AGCGGCTCAAAATTATTTATCACACATTCAGGCTTTACACCTTAAAGATG
AACAATGAGCTTAGCCTTCACATCAAATCCCAGAACGGTGAACAAACCGT
TCGGTGCCATCAAAACTTGTAAAATATATCGGCCAACCTCCTGTCCGCCT
CCGGTCCAGGTATTCCTTTTTGCCCTCCAAATAATGCTCTCCCAAACAAT
GCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCC
TGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTT
ACAGAAGGGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAAC
GGCCATTCTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGG
TGATGTGCGTGCTGTTTCAATCAAAGGGTCAAGAACTGATTGGCAACCCA
TGTCAAGGAACTGGGGTCAAAACTGGCAAAGTAAC
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