CN189366

Overview
NameCN189366
Unique NameCN189366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2727 contig Csv1_Contig2727:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP +HFD++QP +E+I  Y+ GIVPV ++RV C +KGG+RF ING  YF LV I NVGGAG +++VSIKGS+T W  MSRNWG NWQSN
Sbjct:  117 GGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSN 210          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQS 682
            GGWCNPP+ HFD++QP +E+I  Y AGI+PV Y+RVPC +KGG+RFTINGH YF LVL+TNV  AG ++++ + GS T DW PM+RNWG  W S
Sbjct:  130 GGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHS 223          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQS 682
            GGWCNPP+ HFD++QP +E+I  Y+AGI+PV Y+RVPC +KGG+RFTINGH YFNLVL+TNV   G ++++ + GS  TDW PM RNWG NW S
Sbjct:  143 GGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHS 236          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQS 682
            +GGWCNPP+ HFD++QP +E+I  Y+ GI+PV Y+RVPC +KGG+RFTINGH YF LVL+TNVG AG ++A+ +KGS++ DW  M+ NWG  W S
Sbjct:  124 SGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHS 218          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            GGWCNPP++HFD+SQP +E+I  Y+AGIVPV YRRV C R+GG+RFT+ G  +F LVL+ NV G+G V AVS++G+ T W  MSRNWG NWQS
Sbjct:  118 GGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQS 210          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR--TDWQPMSRNWGQNWQS 682
            GGWCNPP+ HFD++QP +E+I  Y+ GIVPV++RRVPC R+GG+RFT+ G  YF LVL+TNV  AG VR++ ++GSR    W  MSRNWG NWQS
Sbjct:  125 GGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQS 219          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            GGWCNPP+ HFD+SQP +EQI  Y+AGIVPV Y+RV C R+GG+RFT+ G +YF LVLITNV G+G V +  IKG+ T W  MSRNWG NWQS
Sbjct:  119 GGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQS 211          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.877e-32
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSN 685
            GGWCNPP+ HFD++QP F  IA+YKAGIVP+ Y++V C R GG+RFTING +YF LVLI+NV G G++  V IKGS+++ W+ MSRNWG N+QSN
Sbjct:  119 GGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSN 213          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.877e-32
Identity = 57/94 (60.64%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCNPP+ HFD+++P + QI  YKAGIVPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G +++V +KG  TD  P+SRNWG NWQS+
Sbjct:  123 GGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSH 216          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 53/94 (56.38%), Postives = 78/94 (82.98%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            AGGWCNPP+ HFD+++P F ++A ++AGI+PV+YRRVPC R GG+RF   G+SY+ L+ + NVGGAGD++++++KGSRT+W  MS NWG ++Q+
Sbjct:  124 AGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQA 217          
The following BLAST results are available for this feature:
BLAST of CN189366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP11_ARATH8.887e-3464.89Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP23_ORYSJ1.980e-3361.70Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.586e-3362.77Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ2.586e-3360.00Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ7.524e-3363.44Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP29_ORYSJ1.676e-3261.05Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ2.859e-3265.59Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH4.877e-3263.16Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP15_ORYSJ4.877e-3260.64Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH1.419e-3156.38Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189366 ID=CN189366; Name=CN189366; organism=Citrus sinensis; type=EST; length=685bp
TTTTATTAAGATTTTGGTGACCTGCCATGCAAGCGCACCTGCCATGGCAA
AGGCCGGATGACAAAGAATAATCAGGTCTCAGCCATCTTAATTTCAGGCT
TCTCTGTCCTGACGCATCTCTTACATCCATTATAAAAACCCTCCACAATC
CCGCAATTCACTCCCAATTATGCGGCACAAGCCTACCCGCATGATCAATT
AGCGGCTCAAAATTATTTATCACACATTCAGGCTTTACACCTTAAAGATG
AACAATGAGCTTAGCCTTCACATCAAATCCCAGAACGGTGAACAAACCGT
TCGGTGCCATCAAAACTTGTAAAATATATCGGCCAACCTCCTGTCCGCCT
CCGGTCCAGGTATTCCTTTTTGCCCTCCAAATAATGCTCTCCCAAACAAT
GCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCC
TGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTT
ACAGAAGGGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAAC
GGCCATTCTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGG
TGATGTGCGTGCTGTTTCAATCAAAGGGTCAAGAACTGATTGGCAACCCA
TGTCAAGGAACTGGGGTCAAAACTGGCAAAGTAAC
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