CN189366

Overview
NameCN189366
Unique NameCN189366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2727 contig Csv1_Contig2727:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GG CNPP +HF L    FE+IA +KAG +PV YRR+ C ++G +RFT++G   F  VLITNV G+GD+ AV IKGSRT W PM RNWGQNW  N
Sbjct:  129 GGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHIN 222          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQ 679
            GGWCN  + +FD+SQP +E I  Y AGIVP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQ 194          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            AGG CNPP  HF L    FE+IA +KAG++P+ YRRV C R GG+RF + G S+F  VLI+NVGGAGDVR+V IKG+ + W  M RNWGQ W  N
Sbjct:  120 AGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHIN 214          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.057e-27
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  407 GWCNPPQQHFDLSQPVFEQIAQY-KAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSN 685
            GWCN P+ HFD+S P F +IA+    GIVPV YRRV C R+GG+RFT+ G   FN+V+I+NVGG G VR+V+++GS+   W  M+RNWG NWQS+
Sbjct:  114 GWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSS 208          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  410 WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            WC  P +HFDLS P+F +IAQ KA +VPV YRRVPC++ GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTN 220          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            GGWCN P++H +LS   F  IA+ +A ++P+ YRRV C R+GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+
Sbjct:  120 GGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSS 213          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK-GSRTDWQPMSRNWGQNWQS 682
            GGWCNPP+ HFDLS+P F ++A ++AGIVPV YRRVPC+R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q+
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQA 221          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK--GSRTDWQPMSRNWGQNWQ 679
            GGWCNPP+ HFD++ P F ++AQ  AGIVPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K  G    W   + NWG  +Q
Sbjct:  143 GGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQ 236          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 45/86 (52.33%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  428 QHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGS-RTDWQPMSRNWGQNWQS 682
            +HFDL+ P F  IA+ K G+VPVSYR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKT 247          
The following BLAST results are available for this feature:
BLAST of CN189366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP13_ARATH4.272e-2859.57Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP20_ORYSJ7.287e-2856.52Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ9.517e-2858.95Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH8.057e-2756.84Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH5.222e-2657.61Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH5.222e-2653.19Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP30_ORYSJ1.985e-2554.26Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ1.680e-2453.19Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.572e-2252.33Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189366 ID=CN189366; Name=CN189366; organism=Citrus sinensis; type=EST; length=685bp
TTTTATTAAGATTTTGGTGACCTGCCATGCAAGCGCACCTGCCATGGCAA
AGGCCGGATGACAAAGAATAATCAGGTCTCAGCCATCTTAATTTCAGGCT
TCTCTGTCCTGACGCATCTCTTACATCCATTATAAAAACCCTCCACAATC
CCGCAATTCACTCCCAATTATGCGGCACAAGCCTACCCGCATGATCAATT
AGCGGCTCAAAATTATTTATCACACATTCAGGCTTTACACCTTAAAGATG
AACAATGAGCTTAGCCTTCACATCAAATCCCAGAACGGTGAACAAACCGT
TCGGTGCCATCAAAACTTGTAAAATATATCGGCCAACCTCCTGTCCGCCT
CCGGTCCAGGTATTCCTTTTTGCCCTCCAAATAATGCTCTCCCAAACAAT
GCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCC
TGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTT
ACAGAAGGGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAAC
GGCCATTCTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGG
TGATGTGCGTGCTGTTTCAATCAAAGGGTCAAGAACTGATTGGCAACCCA
TGTCAAGGAACTGGGGTCAAAACTGGCAAAGTAAC
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