CN189365

Overview
NameCN189365
Unique NameCN189365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L+TN+ G+G + ++S+KGS T W  MSRNWG NWQ  + L GQ+LSF VT++ G T+V ++V PAGWSFGQTFS  Q
Sbjct:  169 LVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNV   G ++++ I GS  TDW PM RNWG NW S SYL GQ+LSF+VT  DG T+V  N+ P+GW FGQTF+
Sbjct:  182 LVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFT 256          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LI+NVGGAGDVR+V IKG+ + W  M RNWGQ W  NS   GQ LSF++T+SDG T+ + NV P  W FG+T++G Q
Sbjct:  178 LISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQ 254          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNV   G ++++ I GS  TDW PM RNWG NW S SYL GQ LSF+VT  DG T+V  N+ P+GW FGQTF+
Sbjct:  198 LVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFA 272          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSR--TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L+TNV  AG VR++ ++GSR    W  MSRNWG NWQS +YL+GQ LSF+VT +DG T+V   V P  W FGQTF+  Q
Sbjct:  182 LVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFASTQ 260          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            LI NVGGAGD++ V +KG++T W  M +NWGQNW + + L GQ LSF+VTTSDG T    NV P  W FGQTF G
Sbjct:  195 LIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  406 NVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 621
            NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S +VTTSDG T    +V PA W FGQTF G
Sbjct:  187 NVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+ NV G+G V AVS++G+ T W  MSRNWG NWQS + L GQ LSF VTT+ G  ++  +VAPAGW FGQTFS
Sbjct:  175 LVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  406 NVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 621
            NVGGAGD++ + +KG +T W  M +NWGQNW +   L GQ +SF+VTTSDG T   NNV P  W FGQTF G
Sbjct:  201 NVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNV  AG ++++ + GS T DW PM+RNWG  W S +YL GQ LSF+VT +D  T+V  NV P GW FGQTF+
Sbjct:  187 LVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFA 261          
The following BLAST results are available for this feature:
BLAST of CN189365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP18_ORYSJ2.148e-2057.14Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.148e-2057.33Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ2.806e-2057.14Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.664e-2057.33Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ6.250e-2055.70Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH8.163e-2058.67Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP21_ARATH8.163e-2063.89Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP27_ORYSJ1.819e-1959.46Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP25_ARATH1.819e-1956.94Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ORYSJ1.819e-1954.67Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189365 ID=CN189365; Name=CN189365; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTACTGAGAGAACTGATACATAATTTTATTCACCAAAGTCACAAG
ACATAACATTGATCATTAAAAAAAAAAATTAAAGACACATCCAGCAAAAG
GCTAATAATATTATAAGCACAGTTGCTCAGTTTATAGATGGCGGGTGGTA
CATGCCCTCCACTGCCAGCCAATTTCTGTCTCTGCCAATTTCAAAATTAG
AGCAGAGCAGAAACCACCGTACTAGAATACATAATCAAAATATAAAACGC
CAAAGGGCCATTTCAAAATAAGCCCTTTGTCATTTTGATACCAGATTCAA
CTAATTAACGCTATTACACTCATTATTTTATACTTGAAAATGTGAAAAAA
AAAAAAAAAACTGCTGGATTTTGGAGGCTGAGTTTCAACTTCAGGGAACT
TGCAGGCCACTGAAGGTTTGGCCAAAGGACCAGCCAGCTGGGGCAACATT
GTTAGAGACAACAGTGTGGCCATCACTTGTGGTGACCTTAAATGAGAGGC
TTTGGCCATTGAGGTAACTGTTACTTTGCCAGTTTTGACCCCAGTTCCTT
GACATGGGTTGCCAATCAGTTCTTGACCCTTTGATTGAAACAGCACGCAC
ATCACCAGCGCCTCCGACGTTTGTGATTAGGA
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