CN189365

Overview
NameCN189365
Unique NameCN189365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.819e-19
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  406 NVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 621
            NVGGAGD++ + +KG +T W  M +NWGQNW +   L GQ +SF+VTTSDG T   NNV P  W FGQTF G
Sbjct:  194 NVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.375e-19
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNV   G ++++ + GS  TDW PM RNWG NW S SYL GQ LSF+VT  DG T+V  N+ P+GW FGQTF+
Sbjct:  200 LVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFA 274          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.102e-19
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G T+V ++  PAGWSFGQTFS
Sbjct:  169 LVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            LI NVGGAGD++ V +K ++T W  M +NWGQNW +++ L GQ LSF+VTT+DG T    NV P  W FGQTF G
Sbjct:  201 LIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G T+V ++  PAGWSFGQTFS
Sbjct:  160 LVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  412 LITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 630
            LI+NV G G++  V IKGS+++ W+ MSRNWG N+QSN+YLNGQSLSFKV  SDG    + NV P+ W FGQ+F
Sbjct:  176 LISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.026e-19
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L++NV G+G VR+VS+KG  T W  ++RNWG NWQ NS L GQ+LSF VT++ G T+   NV P+ WSFG TF+  Q
Sbjct:  175 LVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFTSNQ 251          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.179e-18
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNVG AG ++A+ +KGS++ DW  M+ NWG  W S +YL GQ LSF+VT +DG T+V  NV   GW FGQTF+
Sbjct:  182 LLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFA 256          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.626e-18
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            LI+NV G+G +++V +KG  TD  P+SRNWG NWQS++ L GQ+L+F VT++ G T+V  N+ PA W FGQ+FS
Sbjct:  180 LISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LITNV G+G V +  IKG+ T W  MSRNWG NWQS + L GQ+LSF VTT+ G  +   +VAPA W FGQTFS  Q
Sbjct:  176 LITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQ 252          
The following BLAST results are available for this feature:
BLAST of CN189365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP23_ARATH1.819e-1956.94Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP22_ORYSJ2.375e-1956.00Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ3.102e-1955.41Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH5.291e-1956.00Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP20_ORYSJ5.291e-1955.41Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH5.291e-1959.46Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP25_ORYSJ9.026e-1954.55Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.179e-1854.67Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ2.626e-1854.05Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ3.430e-1858.44Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189365 ID=CN189365; Name=CN189365; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTACTGAGAGAACTGATACATAATTTTATTCACCAAAGTCACAAG
ACATAACATTGATCATTAAAAAAAAAAATTAAAGACACATCCAGCAAAAG
GCTAATAATATTATAAGCACAGTTGCTCAGTTTATAGATGGCGGGTGGTA
CATGCCCTCCACTGCCAGCCAATTTCTGTCTCTGCCAATTTCAAAATTAG
AGCAGAGCAGAAACCACCGTACTAGAATACATAATCAAAATATAAAACGC
CAAAGGGCCATTTCAAAATAAGCCCTTTGTCATTTTGATACCAGATTCAA
CTAATTAACGCTATTACACTCATTATTTTATACTTGAAAATGTGAAAAAA
AAAAAAAAAACTGCTGGATTTTGGAGGCTGAGTTTCAACTTCAGGGAACT
TGCAGGCCACTGAAGGTTTGGCCAAAGGACCAGCCAGCTGGGGCAACATT
GTTAGAGACAACAGTGTGGCCATCACTTGTGGTGACCTTAAATGAGAGGC
TTTGGCCATTGAGGTAACTGTTACTTTGCCAGTTTTGACCCCAGTTCCTT
GACATGGGTTGCCAATCAGTTCTTGACCCTTTGATTGAAACAGCACGCAC
ATCACCAGCGCCTCCGACGTTTGTGATTAGGA
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