CN189362

Overview
NameCN189362
Unique NameCN189362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 94/175 (53.71%), Postives = 117/175 (66.86%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPM 627
            W+ A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ + GS  T W PM
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPM 226          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 95/175 (54.29%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPM 627
            W+ A ATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ VTATNFC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPM 224          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 95/172 (55.23%), Postives = 118/172 (68.60%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GW + RATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYEI C + P+WCLPG+I +TATNFC            WCNPPQ+HFDLSQP+F  IA+Y+AGVVPV ++RVPC + GG++F I G+ +F ++L  NVGGAG V A+ IKG+RT W  M
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAM 258          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.783e-51
Identity = 96/176 (54.55%), Postives = 119/176 (67.61%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPM 627
            GW+ A ATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY+I C     P+WCL G +I +TATNFC          GGWCNPP+ HFD++QP F  IA+Y+AG+VP+ YK+V C R GG+RFTING +YF LVLI+NV G G++  V IKGS++  W+ M
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETM 202          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.783e-51
Identity = 94/175 (53.71%), Postives = 115/175 (65.71%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPM 627
            W  A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPM 208          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 94/182 (51.65%), Postives = 116/182 (63.74%), Query Frame = 1
Query:   97 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR--TGWQPM 627
            A    GW    ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C    DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA++RVPC RRGG+RFT+ G  YF LVL+TNV  AG V ++ ++GSR   GW  M
Sbjct:   28 AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAM 209          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.777e-51
Identity = 96/172 (55.81%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  121 NARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            +A ATFY              YGNLY+ GYG   AALS+ALFN+G  CG+CY I C  +  KWC PG  +I +TATN C          GGWCNPP+QHFD+SQP +++IA Y+AG+VPV YKRVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKGS TGW  M
Sbjct:   30 SAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAM 201          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.510e-50
Identity = 94/175 (53.71%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            G  N  ATFY              YG+LYS GYGT TAALSTALFN+G SCG CY I C +  D +WCL G ++++TATNFC          GGWCNPP +HFD++QP ++ I  YR G+VPV ++RV C ++GG+RF ING  YF LV I NVGGAG + +VSIKGS+TGW  M
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAM 199          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.393e-50
Identity = 93/174 (53.45%), Postives = 112/174 (64.37%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLP-GTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            WI A ATFY              YGNLY QGYG   AALSTALFN+G +CG CY I C  D   +WC P G + VTATN C          GGWCNPP++HFD+SQP ++ I  YRAG+VPV Y+RV C RRGG+RFT+ G  +F LVL+ NV G+G V AVS++G+ TGW  M
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQM 200          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.180e-49
Identity = 94/173 (54.34%), Postives = 112/173 (64.74%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W  A ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY I C  +   WC PGT I +TATN C          GGWCNPP++HFD+SQP +  IA Y+AG+VPV +KRVPC + GGIRFTI+G  YF LV + NVGG+G V  VSIKGS+T W  M
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAM 195          
The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXP22_ORYSJ4.693e-5253.71Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ6.130e-5254.29Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH6.130e-5255.23Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP17_ARATH1.783e-5154.55Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP14_ORYSJ1.783e-5153.71Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ5.189e-5151.65Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ6.777e-5155.81Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH1.510e-5053.71Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP27_ORYSJ4.393e-5053.45Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP33_ORYSJ2.180e-4954.34Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bp
AGGTTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGC
TGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTA
ATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTTTCTATGGTGGTGGC
GATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAG
CCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACA
ACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCC
AAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCC
ACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGC
AGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATAC
AGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAG
GGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGT
TGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAA
GGGTCTAGAACTGGCTGGCAGCCCATG
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