CN189362

Overview
NameCN189362
Unique NameCN189362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.846e-48
Identity = 87/175 (49.71%), Postives = 115/175 (65.71%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GW +  ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY+I C +  +P+WCL G T+ +T TN C          GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G + +V +KG  T   P+
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPL 205          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.196e-47
Identity = 92/174 (52.87%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W  A ATFY              YGNLY QGYG + AALS ALFN+G SCG CY I C     P+WC  GT + VTATN C          GGWCNPP+ HFD+SQP ++ I  Y+AG+VPV Y+RV C R+GG+RFT+ G +YF LVLITNV G+G V +  IKG+ TGW  M
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQM 201          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.481e-47
Identity = 89/173 (51.45%), Postives = 111/173 (64.16%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W +A ATFY              YGN+YS GYGTNT ALS+AL+ +G SCG+CY + C  +  +WC  GT + VTATN+C          GGWCNPP++HFD+SQP ++ IA Y +G+VPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T W  M
Sbjct:   27 WTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSM 199          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.546e-47
Identity = 90/185 (48.65%), Postives = 115/185 (62.16%), Query Frame = 1
Query:   94 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPM 627
            H N G    G W  A ATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KCV+ P  C  G   ++VTATN C          GGWCNPP++HFDLS P F  IAQ +AG+VP++Y+RVPC + GGIR+TI G+ YFNLV+++NVGGAGDV  +S+KG+ R  W P+
Sbjct:   31 HRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPL 215          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.937e-47
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGW 618
            GW    ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY I C     P+WC  G  + +TATN C          GGWCNPP+ HFD+++P +  I  Y+AG++PV Y++V C R+GGIRFT+ G ++F LVL++NV G+G V +VS+KG  TGW
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGW 197          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 83/173 (47.98%), Postives = 110/173 (63.58%), Query Frame = 1
Query:  109 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            G W  A ATFY              YGNL++ GYG +TAALST LFN+G  CG C++I C   P      + +VTATN C          GGWCNPP+ HFD+++P F  +A +RAG++PVAY+RVPC R GG+RF   G+SY+ L+ + NVGGAGD+ ++++KGSRT W  M
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISM 207          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.462e-45
Identity = 84/173 (48.55%), Postives = 109/173 (63.01%), Query Frame = 1
Query:  106 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGW 618
            G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KCV+ P  C  G+   +VTATN C          GGWCNPP+ HFDL++P F  IA ++AG++PV+Y+RV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGW 199          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.910e-45
Identity = 90/175 (51.43%), Postives = 109/175 (62.29%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG CY I C  D  P  C  GT I VT TNFC          GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS TGW  M
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQM 194          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.758e-44
Identity = 86/174 (49.43%), Postives = 108/174 (62.07%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W+   ATFY              YGNLY QGYG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+C          GGWCN  + HFD+SQP +++I  Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW  M
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQM 194          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W  ARAT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++CV+D +WC+PGT I++TATNFC          GG CNPP +HF L    F+ IA ++AG +PV Y+R+ C + G +RFT++G   F  VLITNV G+GD+ AV IKGSRTGW PM
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPM 211          
The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXP15_ORYSJ1.846e-4849.71Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ1.196e-4752.87Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ3.481e-4751.45Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ4.546e-4748.65Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ5.937e-4749.42Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH7.754e-4747.98Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ARATH1.462e-4548.55Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP18_ORYSJ1.910e-4551.43Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.758e-4449.43Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH3.049e-4348.26Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bp
AGGTTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGC
TGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTA
ATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTTTCTATGGTGGTGGC
GATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAG
CCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACA
ACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCC
AAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCC
ACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGC
AGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATAC
AGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAG
GGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGT
TGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAA
GGGTCTAGAACTGGCTGGCAGCCCATG
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