CN189362

Overview
NameCN189362
Unique NameCN189362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.793e-43
Identity = 86/172 (50.00%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W +A+A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KCV+D K+CLPGT I+VTATNFC          GG CNPP  HF L    F+ IA ++AGV+P+ Y+RV C R GG+RF + G S+F  VLI+NVGGAGDV +V IKG+ +GW  M
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSM 203          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.673e-41
Identity = 85/176 (48.30%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPM 627
            W  A ATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+++CV     C  G+  I VTATN C          GG  WCNPP+ HFDLS+P F  +A +RAG+VPV Y+RVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  M
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRM 211          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40
Identity = 83/174 (47.70%), Postives = 105/174 (60.34%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV--NDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQM 185          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 82/170 (48.24%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR 609
            GWI A AT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV Y+RV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSK 190          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 82/172 (47.67%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W +ARA +Y               YG+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV Y+RVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  M
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVM 209          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  184 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            YG+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT+FC          GGWCN P++HF++S+  F  +A+ +A +VPV ++RV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRTGW PM
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPM 206          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.466e-37
Identity = 72/150 (48.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:  184 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            YG+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G+  ++VTAT+FC          GGWCN P++H +LS   F  IA+ RA ++P+ Y+RV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPM 202          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 1
Query:  208 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG 615
            Y T TAALST LF +G  CG CYE++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV Y+RVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGG 221          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = 1
Query:   94 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPM 627
            H N G    G W++  ATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K  +        T++VTATN                    +HFDL+ P F  IA+ + GVVPV+Y++V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+
Sbjct:   71 HVNHGRYKCGPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPL 237          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  106 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSR--TGWQPM 627
            G GW +  AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY+IKC  + + C    + V  T+ C          GG C     HFD+S   F  +A          AGV+ + YKRVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R   GW+ M
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAM 217          
The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXP10_ORYSJ6.793e-4350.00Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ1.673e-4148.30Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ORYSJ1.416e-4047.70Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH1.850e-4048.24Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH1.199e-3947.67Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP16_ORYSJ1.566e-3951.33Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH1.466e-3748.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP17_ORYSJ1.914e-3751.45Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.624e-2839.34Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ1.743e-1431.18Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bp
AGGTTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGC
TGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTA
ATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTTTCTATGGTGGTGGC
GATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAG
CCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACA
ACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCC
AAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCC
ACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGC
AGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATAC
AGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAG
GGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGT
TGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAA
GGGTCTAGAACTGGCTGGCAGCCCATG
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