CX286791

Overview
NameCX286791
Unique NameCX286791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286791_ssr13 microsatellite CX286791_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CX286791_ssr201 microsatellite CX286791_ssr201:201..218. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 481
            R+Y+GNIP +ID+  L ++  EHG V  A V++D+ +GRSR F FV M +  + +  I  L+G  + GR I+VN  E+
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269          

HSP 2 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 469
            ++++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A+  +E  +  ++ GR + VN
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN 171          
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 478
            + RVY+GN+   +D D L  +  E G V  A+V+YD+ +GRSR F FV   + E+ N  IE L+G ++ GR I+V+  E
Sbjct:  193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          

HSP 2 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484
            ++++GN+  + D+  L ++ +  G VE  EVIYDK TGRSR F FV M + E+  A  ++ NG E+ GR ++VN    P
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 166          
The following BLAST results are available for this feature:
BLAST of CX286791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ROC3_NICSY1.318e-1242.3128 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICPL2.248e-1241.7730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC01001A11Rv Veg1 Citrus clementina cDNA clone C01001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286791 ID=CX286791; Name=CX286791; organism=Citrus clementina; type=EST; length=504bp
AATGACTTCATTATCATCATCATCATCTCTAATACTGTCTCAACAAAATC
TCATTTTTTCAAAAACCCACTTCACATTTCAATCAAGACAACCAATTCTT
CAAATCAGATTTCCAAAACTCTCATATTCTTTGCACAATCTCAAGACAGC
AAGCACCGAAGAATCCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTA
CATCATCATCATCATCATCGGTTGACACGTCTTCAGAGTTTGCTAGGAGG
GTCTATATTGGTAACATTCCTAGAAATATTGATAATGATGAACTTACAAA
GATTGTTCAAGAACACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATA
AGTACACTGGAAGGAGTCGCCGATTTGCCTTTGTTATGATGAAAACTGTT
GAGGATGCAAATGCAGTGATTGAGAAACTGAACGGCACTGAAATTGGTGG
ACGTGAGATCAAAGTAAACATCACAGAGAAACCTTTGGTGCAAGTTGATT
TGTC
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