CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.008e-71
Identity = 126/160 (78.75%), Postives = 144/160 (90.00%), Query Frame = 1
Query:   70 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            +A+RFIKCVTVGDGAVGKTC+LI YT N FPTDY+PTVFDNFSANV V+GS VNLGLWDTAGQEDY+RLRPLSYRGADVFIL+FSLIS+ASYENV KKW+PEL+ +APGVP++LVGTKLDLR+D+ +  DHP +  I+T  GEELRKLIGA AYIECSSK
Sbjct:    6 AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSK 165          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 9.967e-71
Identity = 125/159 (78.62%), Postives = 142/159 (89.31%), Query Frame = 1
Query:   73 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            A++FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPI+LVGTKLDLRD + +  DHP A  I+TA GEELRK IGA AYIECSSK
Sbjct:    4 ATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSK 162          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.220e-70
Identity = 127/160 (79.38%), Postives = 144/160 (90.00%), Query Frame = 1
Query:   70 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            +A+ FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF+ANV+V+G TVNLGLWDTAGQEDYNR+RPLSYRGADVFILAFSLIS+ S+EN++KKW+PEL+HYAP VPI+LVGTK DLRD+ QF  ++PGA  I    G+ELRK IGA AYIECSSK
Sbjct:   14 TATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSK 173          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 4.947e-70
Identity = 127/161 (78.88%), Postives = 141/161 (87.58%), Query Frame = 1
Query:   67 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G  VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKLDLRDDK +  DH     I++  GEELRK IGA AYIECSSK
Sbjct:    1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSK 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+   G  + K IGA  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+   G  + K IGA  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+   G  + K IGA  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+   G  + K IGA  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.970e-54
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+   G  + K IGA  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.221e-53
Identity = 99/156 (63.46%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P VPIILVGTKLDLRDDKQ    +      PI+   G  + K I A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSA 159          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_ORYSJ2.008e-7178.75Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC2_ORYSJ9.967e-7178.62Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC9_ARATH2.220e-7079.38Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC7_ARATH4.947e-7078.88Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC1_RAT4.970e-5464.74Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE4.970e-5464.74Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN4.970e-5464.74Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CANFA4.970e-5464.74Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN4.970e-5464.74Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_DROME3.221e-5363.46Ras-related protein Rac2 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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