CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKID 125          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKID 125          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKID 125          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVKMLVGNKID 125          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLD 429
            +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKID 125          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLR 435
            SR  K + +GD  VGKTCL   + +  FP     T+  +F    V ++G  + + LWDTAGQE + + +    YR     +  + + + AS+ ++   WI E K +  A  +P ILVG K DLR
Sbjct:   31 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PSWIEECKQHLLASDIPRILVGNKCDLR 153          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 435
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + ++G  +   +WDTAGQE Y  +    YRGA   +L + +    ++E    +W+ EL+ H  P + ++L+G K DLR
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAG-RWLKELRDHTDPNIVVMLIGNKSDLR 131          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDK 444
            K V +GD AVGKT +L  +  N F  D   T+   F    +V+   +V   +WDTAGQE Y  +    YRGA   +L + +  + +++++  +W+ EL+ +A   + I+L G K DL D +
Sbjct:   17 KVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHI-PRWLEELRAHADRNIVIMLTGNKTDLEDQR 136          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQ 447
            K V +GD  VGK+ LL  Y  N F    + T+   FS   + ++   + L LWDTAGQE YN +    Y+GA   ++ +++  + S+ N+ +KW+ + +  A     I+LVG K DL++ ++
Sbjct:   13 KIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNL-EKWLKKFRENAHQDYGIMLVGNKSDLKEYRE 133          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K  L            +  + T   ++L +  G P +IE S+K
Sbjct:    5 KLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCAL-----------PSRTVDTKQAQDLARSYGIP-FIETSAK 147          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_PONAB2.495e-1333.90Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE2.495e-1333.90Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN2.495e-1333.90Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK2.495e-1333.90Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN2.495e-1333.90Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RB33B_PONAB3.259e-1334.68Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB11E_LOTJA3.259e-1333.90Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11C_TOBAC3.259e-1333.88Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RB11B_DICDI3.259e-1333.61Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RASK_XENLA3.259e-1332.05GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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