CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.685e-47
Identity = 85/156 (54.49%), Postives = 118/156 (75.64%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+    G++L K IGA  Y+ECS+
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSA 165          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 7.685e-47
Identity = 85/156 (54.49%), Postives = 118/156 (75.64%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+    G++L K IGA  Y+ECS+
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSA 165          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.004e-46
Identity = 92/156 (58.97%), Postives = 111/156 (71.15%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+   G+ L K I A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.004e-46
Identity = 92/156 (58.97%), Postives = 111/156 (71.15%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+   G+ L K I A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.004e-46
Identity = 92/156 (58.97%), Postives = 111/156 (71.15%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+   G+ L K I A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.004e-46
Identity = 85/156 (54.49%), Postives = 114/156 (73.08%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            +KCV VGDGAVGKTCLLISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S  S+ENV +KW PE+ H+ PGVP ++VGT++DLR++K     +      PI+   GE+  + + A  Y+ECS+
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.236e-46
Identity = 86/159 (54.09%), Postives = 117/159 (73.58%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            +R +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PELK   P VP +L+GT++DLRDD +    + +    P++  HG +L K IGA  Y+ECS+
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSA 177          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.236e-46
Identity = 88/154 (57.14%), Postives = 114/154 (74.03%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IK V VGDGAVGK+CLLI+YT+N FP +YVPTVFDN+SANV+++G   NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S+AS+EN+  KW PE+ H+AP +PI+LVGTK DLR      +  P    +S A    L + +G   Y+E S+
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHD--LKRP---EVSAAEANNLVRELGFSGYVETSA 152          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.236e-46
Identity = 86/156 (55.13%), Postives = 116/156 (74.36%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++     +      PI+   GE+L K + A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.920e-46
Identity = 90/157 (57.32%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            IK V VGDGAVGKTCLLI YT+N FP DY+PTVFDN+  ++      + L LWDTAGQE+Y++LRPLSY  A +F++ FS+ S  SY+NV  KW PE+ H+AP VPIILVGTKLD R+D      +   G   I+TA GEEL+  I A  YIECS+K
Sbjct:    8 IKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAK 164          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_RAT7.685e-4754.49Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE7.685e-4754.49Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOG_MOUSE1.004e-4658.97Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN1.004e-4658.97Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR1.004e-4658.97Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
CDC42_ASHGO1.004e-4654.49Cell division control protein 42 OS=Ashbya gossypi... [more]
RHOJ_MOUSE2.236e-4654.09Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RACA_DICDI2.236e-4657.14Rho-related protein racA OS=Dictyostelium discoide... [more]
CDC42_AEDAE2.236e-4655.13Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
RACC_ENTHI2.920e-4657.32Rho-related protein racC OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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