CX286794

Overview
NameCX286794
Unique NameCX286794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:112..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.814e-46
Identity = 86/156 (55.13%), Postives = 115/156 (73.72%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.506e-46
Identity = 85/158 (53.80%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   79 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            + +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PELK   P VP +L+GT++DLRDD +    + +    P++  HG +L K IGA  Y+ECS+
Sbjct:   20 KMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSA 177          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.110e-45
Identity = 86/159 (54.09%), Postives = 114/159 (71.70%), Query Frame = 1
Query:   76 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            ++ +K V VGDG+VGKTCLLI YT+N FP DYVPTVFDN+ A + V+G  +NLGLWDTAGQED  +LRPLSY   D+F+L FS+IS+ S+ N+S KW+PE+KHY P   +++VGT  D R+D+     +      PI+T  GE+L K I A  Y+ECS+
Sbjct:    6 AKSVKLVVVGDGSVGKTCLLICYTTNEFPKDYVPTVFDNYMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSFNNISSKWLPEIKHYEPKCKMMVVGTNTDCRNDEAMIRKLADENQKPITTEEGEKLAKDIKAICYMECSA 164          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.449e-45
Identity = 85/156 (54.49%), Postives = 115/156 (73.72%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVF+N++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.893e-45
Identity = 80/119 (67.23%), Postives = 104/119 (87.39%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 441
            IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN+ AN++++G   +LGLWDTAGQE+Y+RLRPLSY   DVF++ FS+IS++S+ENVS KW  E+ H+APGVPI+LVGTK D+R+D
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDIRND 122          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.193e-45
Identity = 85/150 (56.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:  103 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            G G VGKTCLL+SYT+N FPT+YVPTVFDN+SA V+V+   +NLGLWDTAGQEDY+R+RPLSY   DVF+L FS++S  S+EN+S KW PE+ H+ P  P +L+GTK+D+RD++            PI++  GE   K IGA  YIECS+
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIRDEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKYIECSA 150          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.357e-43
Identity = 84/156 (53.85%), Postives = 110/156 (70.51%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IKCV VGDGAVGKTCLL+SYT+N FP +Y+ TVFD +S NV+V+G  +NL LWDTAGQ+DY++ R LS+   DVF++ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+     +      P+S   G  + K I A  Y+ECS+
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLECSA 159          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.314e-43
Identity = 90/155 (58.06%), Postives = 111/155 (71.61%), Query Frame = 1
Query:   85 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-PIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSS 546
            IK + VGD +VGKTCLLISYT+N+FP +YVPTVFDN++AN +VN + +NLGLWDTAG E+YN  RPLSY G DVFI+ FSLIS+ S+ENV KKW PE+      V PIILVGTKLDLR   +          ++   GE++R  IGA  Y ECS+
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDLRGKGK-----SEEKEVTPEMGEQMRAAIGAYKYSECSA 154          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.364e-42
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 1
Query:   70 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            S +  +K V VGDGAVGKTCLLI Y  N FP DYVPTVF+N++A        + + LWDTAGQE+Y+RLRPLSY GADV +L FS IS++SYE +  KW PE+ HY P VP ILVGTK+DLR+ +    +     PI+   G  ++K I A  Y+E S+K
Sbjct:    7 SGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAK 166          
BLAST of CX286794 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.443e-42
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 1
Query:   88 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAHGEELRKLIGAPAYIECSSK 549
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+ S  S +NV +KWI E+ H+  GVPIILVG K DLRDD      +      P+ST+ G+++ + IGA  Y+ECS+K
Sbjct:   11 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADYLECSAK 166          
The following BLAST results are available for this feature:
BLAST of CX286794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_BOVIN3.814e-4655.13Cell division control protein 42 homolog OS=Bos ta... [more]
RHOJ_HUMAN6.506e-4653.80Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RACD_ENTHI1.110e-4554.09Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
CDC42_MACFA1.449e-4554.49Cell division control protein 42 homolog OS=Macaca... [more]
RACF2_DICDI1.893e-4567.23Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RACB_ENTHI7.193e-4556.67Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RAC2_CAEEL1.357e-4353.85Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RACH_DICDI2.314e-4358.06Rho-related protein racH OS=Dictyostelium discoide... [more]
RACE_DICDI4.364e-4253.13Rho-related protein racE OS=Dictyostelium discoide... [more]
RHO1_CANAL7.443e-4254.49GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]

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Properties
Property NameValue
Genbank descriptionC01001B03Rv Veg1 Citrus clementina cDNA clone C01001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286794 ID=CX286794; Name=CX286794; organism=Citrus clementina; type=EST; length=551bp
TTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGCCACTGTC
TTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGG
TTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGC
AACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATTTCAGTGC
AAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGGGATACTG
CTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCA
GATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAA
TGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGC
CAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTC
TTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCACGGGGAGGA
GCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAA
C
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