CX286800

Overview
NameCX286800
Unique NameCX286800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286800 vs. ExPASy Swiss-Prot
Match: TBC25_HUMAN (TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:    5 SPIASVMEEDHEAFWCFAGFMKKARHNFRLDEVGIRRQLSIVSKIIKCKDNHLYRHLEQLQAEDCFFVYRMVVVLFRRELIFEQTLCLWEVIWA 286
            SPI +VM+ +  AF CF G MK+   NF  D   +  + + +  +++  D   Y++L++  A+D FF YR +++  +RE  F+  L + EV W+
Sbjct:  339 SPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWS 432
The following BLAST results are available for this feature:
BLAST of CX286800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TBC25_HUMAN7.787e-1132.98TBC1 domain family member 25 OS=Homo sapiens GN=TB... [more]

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Properties
Property NameValue
Genbank descriptionC01001B09Rv Veg1 Citrus clementina cDNA clone C01001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286800 ID=CX286800; Name=CX286800; organism=Citrus clementina; type=EST; length=588bp
ACTCTCTCCAATTGCCTCGGTGATGGAGGAAGACCATGAAGCCTTCTGGT
GTTTTGCTGGTTTCATGAAAAAAGCTCGGCATAATTTCAGGCTGGATGAA
GTGGGAATAAGAAGGCAGTTGAGTATTGTTTCCAAGATAATCAAGTGCAA
GGATAATCATCTCTACAGGCACCTGGAGCAGCTTCAAGCAGAAGATTGCT
TCTTTGTGTACAGAATGGTGGTGGTTCTTTTTAGGAGGGAGCTAATTTTT
GAGCAGACACTTTGCCTCTGGGAGGTGATATGGGCAGACCAAGCAGCAAT
TCGTGCTGGAATTGCTAAATCGGCCTGGGGAAGGATGAGGCTAAGAGCCC
CTCCTACCGATGACCTATTGCTTTATGCAATTGCAGCCTGTGTACTGCAA
AGGAGGAAATTGATCATAGAGAAATATAGTAGCATGGATGAGATCATGAG
GGAATGCAACAGCATGGCTGGACATCTTGATGTTTGGAAGCTTTTAGATG
ATGCCCACGATTTGGTTGTCACTTTGCATGCCAAGATTTAAGGAATGCCT
TTGTCATTGCTCTTCAATGATTCATCTTTTCGATTATT
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