CX286804

Overview
NameCX286804
Unique NameCX286804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286804 vs. ExPASy Swiss-Prot
Match: YC48L_THEEB (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 2
Query:    2 WLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 301
            W++V GG +  S     +E + E+  P++    G LD+ YR+ +E W AGG+G LL + +GG+TW ++     + +N Y + F +  +GF+LG  G+LL+Y+
Sbjct:  239 WMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 339          
BLAST of CX286804 vs. ExPASy Swiss-Prot
Match: YC48L_SYNJA (Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0848 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   74 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 304
            P ++  FG L+  Y++  + W  GG G L+ + +GGKTW   K   NI AN YS++F    +GF+LG  G LL+Y+G
Sbjct:  252 PGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFGPDRGFILGQRGTLLRYVG 328          
BLAST of CX286804 vs. ExPASy Swiss-Prot
Match: YC48L_SYNJB (Ycf48-like protein OS=Synechococcus sp. GN=CYB_2153 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 2
Query:   74 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 301
            P ++  FG L+  Y++  + W  GG   L+ + +GGKTW + K   NI AN YS++F   ++GF+LG  G LL+Y+
Sbjct:  253 PGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQRGTLLRYV 328          
BLAST of CX286804 vs. ExPASy Swiss-Prot
Match: YC48L_SYNR3 (Ycf48-like protein OS=Synechococcus sp. (strain RCC307) GN=SynRCC307_0211 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 2
Query:    2 WLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 304
            W++ RG  L  +   G  EE+ +  +P+ + G+G LD+ +  Q   WA GG+G LL +++GGK W ++       +N     F+   K F LG  G +L+++G
Sbjct:  230 WMVTRGAQLRFNPEGGDYEEWSKPVIPI-TNGYGYLDMAWDPQGNIWAGGGNGTLLVSSDGGKEWEKDPVGTATPSNFTRFVFLGGNKAFALGERGAILRWVG 331          
BLAST of CX286804 vs. ExPASy Swiss-Prot
Match: YC48L_PROMP (Ycf48-like protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0296 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 WLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQYLG 304
            W+L RG  +  +  +   E + +  VP+ + G+  LD+G+  +   WA GG+G L+ + + GKTW  +  A N+  N   ++F+ +     KKGF+LG  G +L++ G
Sbjct:  231 WMLSRGAEIRFNDDSNDLESWTKPIVPILN-GYNYLDMGWDPEGNIWAGGGNGTLIVSKDDGKTWDSDPVASNLPTNFIKIQFLEKDELDAKKGFILGERGYILRWNG 337          
The following BLAST results are available for this feature:
BLAST of CX286804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YC48L_THEEB1.657e-1435.29Ycf48-like protein OS=Thermosynechococcus elongatu... [more]
YC48L_SYNJA6.296e-1441.56Ycf48-like protein OS=Synechococcus sp. (strain JA... [more]
YC48L_SYNJB9.092e-1339.47Ycf48-like protein OS=Synechococcus sp. GN=CYB_215... [more]
YC48L_SYNR36.516e-1132.04Ycf48-like protein OS=Synechococcus sp. (strain RC... [more]
YC48L_PROMP6.516e-1131.48Ycf48-like protein OS=Prochlorococcus marinus subs... [more]

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Properties
Property NameValue
Genbank descriptionC01001C02Rv Veg1 Citrus clementina cDNA clone C01001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286804 ID=CX286804; Name=CX286804; organism=Citrus clementina; type=EST; length=542bp
TTGGCTTCTTGTTCGGGGAGGGGGACTTTTTCTCAGCAAGGGCACAGGGA
TTACAGAGGAGTTTGAAGAAGTTCCGGTACAAAGTCGGGGTTTTGGTATT
CTTGATGTTGGATACCGTTCACAGGATGAGGCTTGGGCAGCAGGTGGCAG
TGGAGTTCTCTTAAAAACCACCAATGGTGGTAAGACATGGATCCGAGAGA
AAGCAGCAGACAACATTGCCGCAAACCTTTACTCGGTGAAGTTCATCAAT
GAAAAGAAGGGGTTCGTATTGGGGAACGATGGAGTCTTGCTTCAATATCT
AGGATAGATTGAAATTTGTACATACGGTATTTATATCTTCATGTGGTAAA
GAGGGACCAAAATGCCGTTGATATGATATTTGTACCGGGCTTGTAACTAC
TAAATTTATATTTACTTATTCGTGACTATAAGCATTTTGTTTCAACGGGG
ACGTTGATCATTTGCAAAAGTTTGCAACTAGACACAACAGTTCATGTTCG
GTGATCGAAGTAAAATATTGTGCAAATATAGAAATGAAATTA
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