CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHILE (Chaperone protein dnaK OS=Rhizobium leguminosarum GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHIEC (Chaperone protein dnaK OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHIE6 (Chaperone protein dnaK OS=Rhizobium etli (strain CIAT 652) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSA (Chaperone protein dnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+QEVV E FG+ P KGVNPDE VA+GAAIQGG+L+G+VK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI T+KSQVFSTA D
Sbjct:  321 DAGVKASEIDEVILVGGMTRMPKIQEVVKEFFGREPHKGVNPDEVVAIGAAIQGGVLKGEVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.796e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++DEV+LVGGM+R+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ FSTA D
Sbjct:  321 DAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BEII9 (Chaperone protein dnaK OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.345e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  +VDEV+LVGGMTR+PKVQE+V + FGK P KGVNPDE VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLSAGEVDEVVLVGGMTRMPKVQEIVKQFFGKEPHKGVNPDEVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BARQU (Chaperone protein dnaK OS=Bartonella quintana GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.345e-41
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+QEVV   FGK P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLKAGEIDEVVLVGGMTRMPKIQEVVQSFFGKDPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BARHE (Chaperone protein dnaK OS=Bartonella henselae GN=dnaK PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.345e-41
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+QEVV   FGK P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLKAGEIDEVVLVGGMTRMPKIQEVVQSFFGKDPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADD 426
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHILW1.375e-4176.42Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHILE1.375e-4176.42Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHIL31.375e-4176.42Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHIEC1.375e-4176.42Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_RHIE61.375e-4176.42Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_MAGSA1.375e-4174.53Chaperone protein dnaK OS=Magnetospirillum magneti... [more]
DNAK_AGRT51.796e-4175.47Chaperone protein dnaK OS=Agrobacterium tumefacien... [more]
DNAK_BEII92.345e-4175.47Chaperone protein dnaK OS=Beijerinckia indica subs... [more]
DNAK_BARQU2.345e-4176.42Chaperone protein dnaK OS=Bartonella quintana GN=d... [more]
DNAK_BARHE2.345e-4176.42Chaperone protein dnaK OS=Bartonella henselae GN=d... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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