CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_SINMW (Chaperone protein dnaK OS=Sinorhizobium medicae (strain WSM419) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++DEV+LVGGMTR+PKVQE V ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGVSAAEIDEVVLVGGMTRMPKVQETVKQLFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEISEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEISEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEISEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHIME (Chaperone protein dnaK OS=Rhizobium meliloti GN=dnaK PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++DEV+LVGGMTR+PKVQE V ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGVSAAEIDEVVLVGGMTRMPKVQETVKQLFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T   +DEV+LVGGMTR+PKVQEVV + FGK P KGVNPDE VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ FSTA D
Sbjct:  321 DAGLTAGQIDEVVLVGGMTRMPKVQEVVKQFFGKEPHKGVNPDEVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHORT (Chaperone protein dnaK OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA I   ++DEV+LVGGMTR+PKVQ+VV + FG+ P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI T+KSQ FSTA D
Sbjct:  321 DAGIKASEIDEVILVGGMTRMPKVQQVVKDFFGREPHKGVNPDEVVAMGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHILO (Chaperone protein dnaK OS=Rhizobium loti GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+QE+V + FGK P KGVNPDE VALGAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLKAGEIDEVVLVGGMTRMPKIQEIVKQFFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SINMW3.063e-4175.47Chaperone protein dnaK OS=Sinorhizobium medicae (s... [more]
DNAK_RHOS73.063e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT3.063e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA3.063e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHIME3.063e-4175.47Chaperone protein dnaK OS=Rhizobium meliloti GN=dn... [more]
DNAK_XANP24.000e-4175.47Chaperone protein dnaK OS=Xanthobacter autotrophic... [more]
DNAK_RHORT4.000e-4174.53Chaperone protein dnaK OS=Rhodospirillum rubrum (s... [more]
DNAK_RHOP54.000e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHILO4.000e-4175.47Chaperone protein dnaK OS=Rhizobium loti GN=dnaK P... [more]
DNAK_NITWN4.000e-4175.47Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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