CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.000e-41
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 79/106 (74.53%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            D  ++  D+ EV+LVGGMTR+PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LINRNTTI TKKSQVFSTAAD
Sbjct:  372 DREVSKSDIGEVILVGGMTRMPKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAAD 477
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIERNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIERNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP2 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain HaA2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  ++ EV+LVGGMTR+PKVQEVV ++FGK P KGVNPDE VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTR+I RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRIIERNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  +++EV+LVGGMTR+PKVQEVV   FGK P KGVNPDE VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLTAGEINEVVLVGGMTRMPKVQEVVKSFFGKEPHKGVNPDEVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSM (Chaperone protein dnaK OS=Magnetococcus sp. (strain MC-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 78/106 (73.58%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +T  D+DEV+LVGGMTR+PKVQ VV + FGK P KGVNPDE VA+GAAIQGG+L+G+V+++LLLDVTPLSLGIETLGG+FT+LI +NTT+ T+KSQVFSTAAD
Sbjct:  321 DAGMTAADIDEVILVGGMTRMPKVQAVVGQFFGKEPHKGVNPDEVVAIGAAIQGGVLKGEVQDVLLLDVTPLSLGIETLGGVFTKLIEKNTTVPTRKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BART1 (Chaperone protein dnaK OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dnaK PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+Q+VV   FGK P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQVFSTA D
Sbjct:  321 DAGLKAGEIDEVVLVGGMTRMPKIQQVVQNFFGKDPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.824e-41
Identity = 78/106 (73.58%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  ++DEV+LVGGMTR+PK+Q+VV   FGK P KGVNPDE VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQVFSTA D
Sbjct:  321 DAGVSANEIDEVVLVGGMTRMPKIQDVVKTFFGKEPHKGVNPDEVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BRUSU (Chaperone protein dnaK OS=Brucella suis GN=dnaK PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.824e-41
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++DEV+LVGGMTR+PK+QEVV   FGK P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI RNTTI TKKSQ FSTA D
Sbjct:  321 DAGLKAGEIDEVVLVGGMTRMPKIQEVVKAFFGKEPHKGVNPDEVVAMGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTAED 426
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NITHX4.000e-4175.47Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
GRP75_RAT5.225e-4174.53Stress-70 protein, mitochondrial OS=Rattus norvegi... [more]
DNAK_RHOPS5.225e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPB5.225e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOP25.225e-4175.47Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_METSB5.225e-4175.47Chaperone protein dnaK OS=Methylocella silvestris ... [more]
DNAK_MAGSM5.225e-4173.58Chaperone protein dnaK OS=Magnetococcus sp. (strai... [more]
DNAK_BART15.225e-4175.47Chaperone protein dnaK OS=Bartonella tribocorum (s... [more]
DNAK_METNO6.824e-4173.58Chaperone protein dnaK OS=Methylobacterium nodulan... [more]
DNAK_BRUSU6.824e-4175.47Chaperone protein dnaK OS=Brucella suis GN=dnaK PE... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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