CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_SALRD (Chaperone protein dnaK OS=Salinibacter ruber (strain DSM 13855) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.923e-35
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA  +  DVDEV+LVGG TRVP VQE V + FGK  +K VNPDE V+LGAA+QGG+L GDV ++LLLDVTPL+LGIETLGG+ T LI  NTTI TK+S+VFSTAAD
Sbjct:  319 DAGHSKSDVDEVILVGGSTRVPLVQETVEDFFGKQANKSVNPDEVVSLGAAVQGGVLSGDVDDVLLLDVTPLNLGIETLGGVMTTLIEANTTIPTKESEVFSTAAD 424
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RHOFD (Chaperone protein dnaK OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.923e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+++V+LVGGMTR+PKVQE V E+FG+ P K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK +Q FSTA D
Sbjct:  327 DAGVNVADINDVILVGGMTRMPKVQEKVKELFGREPRKDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKFAQTFSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_RALEH (Chaperone protein dnaK OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.923e-35
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+D+V+LVGGMTR+PKVQE V E FGK   K VNPDEAVA+GAAIQG +L GD  ++LLLDVTPLSLGIETLGG+ T++I +NTTI TK +QVFSTA D
Sbjct:  327 DAGVKVSDIDDVILVGGMTRMPKVQEQVKEFFGKEARKDVNPDEAVAVGAAIQGSVLSGDRTDVLLLDVTPLSLGIETLGGVMTKMITKNTTIPTKHAQVFSTADD 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_POLSQ (Chaperone protein dnaK OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.923e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   ++D+V+LVGG TR+P VQ+ V EIFGK P K VNPDEAVA+GAAIQG +L GD K++LLLDVTPLSLGIETLGG+ T++I +NTTI TK SQV+STA D
Sbjct:  327 DAGVNVSEIDDVILVGGQTRMPAVQDKVKEIFGKEPRKDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMIPKNTTIPTKHSQVYSTAED 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK2_PHOPR (Chaperone protein dnaK 2 OS=Photobacterium profundum GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.923e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DAN++  D+ +V+LVGG TR+P VQ  V+E FGK P K VNPDEAVA+GAAIQ G+L G+VK++LLLDVTPLSLGIET+GG+ T+LI +NTTI TK +QVFSTA D
Sbjct:  326 DANLSITDITDVILVGGQTRMPMVQAKVTEFFGKEPRKDVNPDEAVAVGAAIQAGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKANQVFSTAED 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: HSP7S_PEA (Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.511e-35
Identity = 68/106 (64.15%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++ KD+DEV+LVGG TR+P VQE+V ++ GK P+  VNPDE VALGAA+Q G+L GDV +++LLDV+PLSLG+ETLGG+ T++I RNTT+ T KS+VFSTAAD
Sbjct:  387 DAKLSIKDIDEVILVGGSTRIPAVQELVKKLIGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAAD 492
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_WOLSU (Chaperone protein dnaK OS=Wolinella succinogenes GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.511e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+ EV++VGG TR+PKVQ+ V +  GK  +K VNPDE VALGAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T++I+R TTI  KKSQVFSTA D
Sbjct:  320 DAGLAKSDIAEVVMVGGSTRIPKVQQRVKDFIGKELNKSVNPDEVVALGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKIIDRGTTIPVKKSQVFSTAED 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_STAS1 (Chaperone protein dnaK OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.511e-35
Identity = 71/106 (66.98%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +++ D+DEV+LVGG TR+P VQE V +  GK P KGVNPDE VA+GAAIQGG++ GDVK+++LLDVTPLSLGIE +GG    LI RNTTI T KSQV+STAAD
Sbjct:  296 DAGLSSSDIDEVILVGGSTRIPAVQEAVKKEVGKDPHKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEIMGGRMNTLIERNTTIPTSKSQVYSTAAD 401
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.511e-35
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+ EV+LVGG TR+P VQ+ V+E FGK   K VNPDEAVA+GAAIQG +L GDVK++LLLDVTPL+LGIETLGG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  326 DAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDEAVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADD 431
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.511e-35
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D+ EV+LVGG TR+P VQ+ V+E FGK   K VNPDEAVA+GAAIQG +L GDVK++LLLDVTPL+LGIETLGG+ T LI +NTTI TKKSQVFSTA D
Sbjct:  326 DAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDEAVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADD 431
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALRD1.923e-3568.87Chaperone protein dnaK OS=Salinibacter ruber (stra... [more]
DNAK_RHOFD1.923e-3566.98Chaperone protein dnaK OS=Rhodoferax ferrireducens... [more]
DNAK_RALEH1.923e-3567.92Chaperone protein dnaK OS=Ralstonia eutropha (stra... [more]
DNAK_POLSQ1.923e-3566.98Chaperone protein dnaK OS=Polynucleobacter sp. (st... [more]
DNAK2_PHOPR1.923e-3566.98Chaperone protein dnaK 2 OS=Photobacterium profund... [more]
HSP7S_PEA2.511e-3564.15Stromal 70 kDa heat shock-related protein, chlorop... [more]
DNAK_WOLSU2.511e-3566.98Chaperone protein dnaK OS=Wolinella succinogenes G... [more]
DNAK_STAS12.511e-3566.98Chaperone protein dnaK OS=Staphylococcus saprophyt... [more]
DNAK_PSEAE2.511e-3568.87Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB2.511e-3568.87Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
back to top