CX287063

Overview
NameCX287063
Unique NameCX287063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length320
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1189..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_BORDL (Chaperone protein dnaK OS=Borrelia duttonii (strain Ly) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.681e-39
Identity = 76/106 (71.70%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +   D++EV+LVGG TR+P +Q++V EIFG+ P+KGVNPDEAVA+GAAIQGGIL G+ K+++LLDVTPLSLGIETLGG+ T+LI RNTTI TKKSQVFSTAAD
Sbjct:  321 DAGLKASDINEVILVGGSTRIPAIQKIVKEIFGQEPNKGVNPDEAVAIGAAIQGGILTGEAKDMVLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_SYNAS (Chaperone protein dnaK OS=Syntrophus aciditrophicus (strain SB) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.195e-39
Identity = 76/106 (71.70%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++ KD+DEV+LVGGMTR+P+VQ+ V EIF + P KGVNPDE VA+GAAIQGG+L G+VK++LLLDVTPLSLGIETLGG+ T+LI +NTTI T+KSQ+FSTAAD
Sbjct:  321 DAGLSPKDIDEVILVGGMTRMPRVQQKVKEIFDREPHKGVNPDEVVAVGAAIQGGVLGGEVKDVLLLDVTPLSLGIETLGGVMTKLIEKNTTIPTRKSQIFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_MOOTA (Chaperone protein dnaK OS=Moorella thermoacetica (strain ATCC 39073) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.867e-39
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA +  KD+D+VLLVGG TRVP VQE V +I G+ P KG+NPDE VALGAAIQGG+L G+VK++LLLDVTPLSLGIETLGG+FT+LI RNTTI T KSQ+FSTAAD
Sbjct:  297 DAGLEPKDIDKVLLVGGSTRVPLVQETVRKILGQEPHKGINPDECVALGAAIQGGVLAGEVKDVLLLDVTPLSLGIETLGGVFTKLIERNTTIPTSKSQIFSTAAD 402
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GRAFK (Chaperone protein dnaK OS=Gramella forsetii (strain KT0803) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.867e-39
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++  D+DEV+LVGG TR+PK+QE V   FGK PSKGVNPDE VA+GAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+ T+LI  NTTI TKKSQ FSTAAD
Sbjct:  320 DAGLSKSDIDEVILVGGSTRIPKIQEEVEAFFGKKPSKGVNPDEVVAIGAAIQGGVLTGDVKDVLLLDVTPLSLGIETMGGVNTKLIESNTTIPTKKSQTFSTAAD 425
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_GLUDA (Chaperone protein dnaK OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.867e-39
Identity = 75/106 (70.75%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA+++  ++DEV+LVGGMTR+PKV E V + FGK P++ VNPDE VA+GAA+QG +L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTI TKKSQ FSTA D
Sbjct:  321 DASVSAAEIDEVILVGGMTRMPKVIEAVKQFFGKEPARNVNPDEVVAIGAAVQGAVLKGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAED 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_DESPS (Chaperone protein dnaK OS=Desulfotalea psychrophila GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.867e-39
Identity = 77/106 (72.64%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA ++   +DEV+LVGGM+R+P VQ+ V EIFGK P KGVNPDE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI +NTT+ TKKSQVFSTAAD
Sbjct:  321 DAGLSASQIDEVILVGGMSRMPMVQKKVVEIFGKEPHKGVNPDEVVAIGAAIQGGVLQGDVKDVLLLDVTPLSLGIETLGGVTTKLIEKNTTVPTKKSQVFSTAAD 426
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFT (Chaperone protein dnaK OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.744e-39
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + T DV EV+LVGG TR+PKVQ+ V++ FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  327 DAGLRTSDVQEVILVGGQTRMPKVQQAVADFFGKEPRKDVNPDEAVALGAAIQGGVLAGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFM (Chaperone protein dnaK OS=Xylella fastidiosa (strain M12) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.744e-39
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + T DV EV+LVGG TR+PKVQ+ V++ FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  327 DAGLRTSDVQEVILVGGQTRMPKVQQAVADFFGKEPRKDVNPDEAVALGAAIQGGVLAGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFA (Chaperone protein dnaK OS=Xylella fastidiosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.744e-39
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + T DV EV+LVGG TR+PKVQ+ V++ FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  327 DAGLRTSDVQEVILVGGQTRMPKVQQAVADFFGKEPRKDVNPDEAVALGAAIQGGVLAGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 432
[Close]
BLAST of CX287063 vs. ExPASy Swiss-Prot
Match: DNAK_XYLF2 (Chaperone protein dnaK OS=Xylella fastidiosa (strain M23) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.744e-39
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTISTKKSQVFSTAAD 318
            DA + T DV EV+LVGG TR+PKVQ+ V++ FGK P K VNPDEAVALGAAIQGG+L GDVK++LLLDVTPLSLGIET+GG+FT++I +NTTI TK SQVFSTA D
Sbjct:  327 DAGLRTSDVQEVILVGGQTRMPKVQQAVADFFGKEPRKDVNPDEAVALGAAIQGGVLAGDVKDVLLLDVTPLSLGIETMGGVFTKIIEKNTTIPTKASQVFSTAED 432
The following BLAST results are available for this feature:
BLAST of CX287063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BORDL1.681e-3971.70Chaperone protein dnaK OS=Borrelia duttonii (strai... [more]
DNAK_SYNAS2.195e-3971.70Chaperone protein dnaK OS=Syntrophus aciditrophicu... [more]
DNAK_MOOTA2.867e-3973.58Chaperone protein dnaK OS=Moorella thermoacetica (... [more]
DNAK_GRAFK2.867e-3972.64Chaperone protein dnaK OS=Gramella forsetii (strai... [more]
DNAK_GLUDA2.867e-3970.75Chaperone protein dnaK OS=Gluconacetobacter diazot... [more]
DNAK_DESPS2.867e-3972.64Chaperone protein dnaK OS=Desulfotalea psychrophil... [more]
DNAK_XYLFT3.744e-3972.64Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_XYLFM3.744e-3972.64Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_XYLFA3.744e-3972.64Chaperone protein dnaK OS=Xylella fastidiosa GN=dn... [more]
DNAK_XYLF23.744e-3972.64Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]

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Properties
Property NameValue
Genbank descriptionC01004C06SK Veg1 Citrus clementina cDNA clone C01004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287063 ID=CX287063; Name=CX287063; organism=Citrus clementina; type=EST; length=320bp
GATGCCAACATTACCACAAAGGATGTGGATGAGGTGCTTTTGGTTGGAGG
AATGACCCGTGTGCCAAAGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTA
AGAGTCCAAGCAAGGGAGTAAATCCTGATGAGGCAGTTGCCCTTGGTGCT
GCTATTCAAGGTGGTATTCTTCGTGGCGACGTCAAAGAGTTGCTTCTCTT
GGATGTTACACCTCTGTCACTGGGTATTGAGACACTAGGTGGTATCTTTA
CCAGGTTGATCAATCGCAACACAACTATTTCAACAAAAAAGAGTCAGGTC
TTCTCAACAGCAGCTGATAA
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