CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOK1 (60 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.547e-20
Identity = 48/76 (63.16%), Postives = 64/76 (84.21%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F++D  A KK+Q GV+KLA+ V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELE+P EN+GA+LV++
Sbjct:    2 AKSILFSED--ARKKMQEGVDKLANTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEIELEEPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ + +D  A   ++ GVN LAD V VTLGPKGRNVVLE K+G+P IVNDGVT+A+E+ELE+P EN+GA+LV++
Sbjct:    2 AAKDIVYRED--ARTAMERGVNALADAVRVTLGPKGRNVVLEKKFGSPMIVNDGVTIAREIELENPFENMGAQLVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F ++  A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+
Sbjct:    2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++
Sbjct:    8 DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F ++  A K L+ G+N+LAD V VT+GPKGRNV+LE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+
Sbjct:    2 AKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + FN++  A KKL+NGV+ L++ V VTLGPKGRNVV+E  YG+P I NDGVT+AKE+ELEDP EN+GA+L+++
Sbjct:    2 AKIIKFNEE--ARKKLENGVDVLSNTVKVTLGPKGRNVVIEKSYGSPLITNDGVTIAKEIELEDPFENMGAQLIKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F ++  A + L+ GVN+LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKE+ELEDP EN+GA+LV++
Sbjct:    2 AKQIKFGEE--ARRALERGVNQLADTVKVTLGPKGRNVVLDKKFGSPMITNDGVTIAKEIELEDPFENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            A K + F +D  A + L+ GVN LAD V VTLGPKGRNVVLE K+G+P+I+NDGV++A+E+EL DPVEN+GA+LV++
Sbjct:    2 AGKQILFRED--ARRALERGVNALADAVKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F++D  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSED--ARRSMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOK11.547e-2063.1660 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH60_DESAP2.021e-2062.3460 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH602_SYNJB2.021e-2061.8460 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_TRIEI2.021e-2063.2460 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_SYNJA2.021e-2061.8460 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH60_METVS2.639e-2061.8460 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_CLOTH2.639e-2061.8460 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH60_CARHZ2.639e-2061.0460 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_BACHD2.639e-2064.4760 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH602_ANAVT2.639e-2060.5360 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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