CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_RHOS5 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+EL D  EN+GA++V++
Sbjct:    2 AAKDVKFDTD--ARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+EL D  EN+GA++V++
Sbjct:    2 AAKDVKFDTD--ARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_RHOPA (60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+EL D  EN+GA++V++
Sbjct:    2 AAKDVKFDTD--ARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PHOPR (60 kDa chaperonin OS=Photobacterium profundum GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L FN+D  A + L+ GVN +AD V +TLGPKGRNVVLE  +G+P I NDGV++AKE+EL+D  E +GA+LV++
Sbjct:    2 AKMLKFNED--ARRALERGVNTVADAVKITLGPKGRNVVLEKSWGSPTITNDGVSIAKEIELKDKFEALGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F +D  A +++  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+EL+D  EN+GA+++R+
Sbjct:    2 AAKDVKFGRD--ARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELKDKFENMGAQMLRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MAGSA (60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ D  A  ++  GV+ LAD V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL D  EN+GA++VR+
Sbjct:    2 AAKEVKFSTD--ARTRMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACRJ (60 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F++D  A   + +GV+KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK +ELE+  EN+GAKLV +
Sbjct:    2 AKEIKFSED--ARSAMLSGVDKLADTVKTTMGPKGRNVVLEQSYGTPTITNDGVTIAKSIELENQFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACRD (60 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F++D  A   + +GV+KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK +ELE+  EN+GAKLV +
Sbjct:    2 AKEIKFSED--ARSAMLSGVDKLADTVKTTMGPKGRNVVLEQSYGTPTITNDGVTIAKSIELENQFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_EUBR3 (60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ +  +  A   L  GV+KLA+ V VTLGPKGRNVVL+  YGAP I NDGVT+AKEVELED  EN+GA+LV++
Sbjct:    2 AKEIKYGSEARAA--LGAGVDKLANTVRVTLGPKGRNVVLDKSYGAPLITNDGVTIAKEVELEDAFENMGAQLVKE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RHOS51.226e-1757.1460 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RHOS11.226e-1757.1460 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RHOPA1.226e-1757.1460 kDa chaperonin OS=Rhodopseudomonas palustris GN... [more]
CH60_PHOPR1.226e-1758.4460 kDa chaperonin OS=Photobacterium profundum GN=g... [more]
CH60_PETMO1.226e-1757.8960 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_NOVAD1.226e-1755.8460 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_MAGSA1.226e-1758.4460 kDa chaperonin OS=Magnetospirillum magneticum (... [more]
CH60_LACRJ1.226e-1757.8960 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_LACRD1.226e-1757.8960 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH60_EUBR31.226e-1760.5360 kDa chaperonin OS=Eubacterium rectale (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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