CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BACP3 (60 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + +  GV+KLAD V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV +
Sbjct:    2 AKQIKFSEE--ARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_THEFY (60 kDa chaperonin 2 OS=Thermobifida fusca (strain YX) GN=groL2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ GVN+LAD V VTLGPKGRNVV++ K+GAP I NDGVTVA+EVELEDP EN+GA+LV++
Sbjct:    8 DESARRALERGVNRLADAVKVTLGPKGRNVVIDKKWGAPTITNDGVTVAREVELEDPYENLGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_PROMA (60 kDa chaperonin 1 OS=Prochlorococcus marinus GN=groL1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  355 LQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            L+NGVN LAD V VT+GPKGRNVVLE K+GAP IVNDGVT+A+++ELE+P EN+GAKL+ Q
Sbjct:   15 LENGVNSLADAVKVTIGPKGRNVVLEKKFGAPDIVNDGVTIARDIELENPFENLGAKLIEQ 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  265 QSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            Q+   R AR   I AA       D  + ++LQ G+NK+AD VGVTLGP+GRNVVLE K+G P+++NDGV++ + +EL+DPVEN GA+L+++
Sbjct:   19 QNKPARAARRLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKE 109          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MYCGA (60 kDa chaperonin OS=Mycoplasma gallisepticum GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK+L F +   A  KL  G+NKLA  V +T GPKGRN ++E KYGAP IVNDGVT+A+E+EL+DPVEN+GAKL+ +A
Sbjct:    3 AKELTFEQQARA--KLLEGINKLAKAVKITAGPKGRNALIEKKYGAPLIVNDGVTIAREIELKDPVENMGAKLIAEA 77          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LEPBL (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELED +EN+GA++V++
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LEPBJ (60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ +N+   A +KL  GVNKLA+ V VTLGPKGRNVV++ K+GAP I  DGVTVAKE+ELED +EN+GA++V++
Sbjct:    2 AKDIEYNET--ARRKLLEGVNKLANAVKVTLGPKGRNVVIDKKFGAPTITKDGVTVAKEIELEDALENMGAQMVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVLE K+G+P I NDGVT+AKE+ELE+P+EN+GA+LV++
Sbjct:    2 AKMIVFNEE--ARRALEKGVNTLAEAVRVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPIENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + FN++  A + L+ GVN LA+ V VTLGPKGRNVVL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKQIVFNEE--ARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACP35.880e-2063.1660 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=... [more]
CH602_THEFY5.880e-2067.6560 kDa chaperonin 2 OS=Thermobifida fusca (strain ... [more]
CH601_PROMA5.880e-2072.1360 kDa chaperonin 1 OS=Prochlorococcus marinus GN=... [more]
RUBA_CHLRE7.679e-2050.55RuBisCO large subunit-binding protein subunit alph... [more]
CH60_MYCGA7.679e-2061.0460 kDa chaperonin OS=Mycoplasma gallisepticum GN=g... [more]
CH60_LEPBL7.679e-2061.8460 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_LEPBJ7.679e-2061.8460 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH60_HELMI7.679e-2061.8460 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_DESHY7.679e-2061.8460 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESHD7.679e-2061.8460 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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