CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+GAP I NDGV++A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKMLKFGED--ARRSMQIGVDKLADTVKVTLGPKGRNVVLDKKFGAPLITNDGVSIAREIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVVL+  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F +D  A  +L+ GVNKLAD + VTLGPKGRNVVL+ K+G+P+I NDGVT+A++++LED  EN+GA+LV++
Sbjct:    2 AKDIKFREDARA--RLEQGVNKLADTLKVTLGPKGRNVVLDKKFGSPQITNDGVTIARDIDLEDNYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOCE (60 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F ++  A + L+ GVN+LAD V VTLGPKGRNVVL+ K+G+P I NDGVT+AKEVELED  EN+GA+LV++
Sbjct:    2 AKEIKFGEE--ARRSLEKGVNQLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAKEVELEDKFENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  + + L+ G+N LAD V +TLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+
Sbjct:    2 AKLVAFHEE--SRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  + + L+ G+N LAD V +TLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+
Sbjct:    2 AKLVAFHEE--SRRSLERGINALADAVKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + F+++  A + L++G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKSIIFSEE--ARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVSLIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+ KL + V VTLGP+GRNVVLE K+GAP I NDGVT+AKEVELEDP+EN+GA LVR+
Sbjct:    2 AKQVVFDRE--AREALEKGITKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAHJ (60 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+KLA+ V VT+GPKGRNVVL+ +Y AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKDLKFSED--ARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEYVAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ +YGAP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKEIKFSED--ARQSMLRGVDQLANAVKVTIGPKGRNVVLDKEYGAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOB87.679e-2063.1660 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH601_MESSB7.679e-2062.3460 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
CH60_NATTJ1.003e-1959.2160 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH60_CLOCE1.003e-1961.8460 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH602_THEVL1.003e-1961.8460 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB1.003e-1961.8460 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH602_SYNJA1.003e-1961.0460 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_MOOTA1.003e-1961.8460 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH60_STAHJ1.310e-1963.1660 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]
CH60_STACT1.310e-1960.5360 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
back to top