CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + + ++  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+GAP I NDGV++AKE+ELEDP EN+GA+LV++
Sbjct:    2 AKQILYGEE--ARRSMQKGVDKLADTVKVTLGPKGRNVVLDKKFGAPLITNDGVSIAKEIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH605_RHILO (60 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKDVKFSRD--ARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_THEFY (60 kDa chaperonin 1 OS=Thermobifida fusca (strain YX) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AAKLIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 46/77 (59.74%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + F+++  A + L++G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKSIIFSEE--ARRALEHGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_STRAL (60 kDa chaperonin 1 OS=Streptomyces albus G GN=groL1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F++D  A + L+ GVN+LAD V VT+GPKGRNVV++ K+GAP I NDGVT+A+EVE +DP EN+GA+LV++
Sbjct:    2 AKILKFDED--ARRALERGVNQLADTVKVTIGPKGRNVVIDKKFGAPTITNDGVTIAREVECDDPYENLGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOAB1.310e-1960.5360 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH605_RHILO1.310e-1961.0460 kDa chaperonin 5 OS=Rhizobium loti GN=groL5 PE=... [more]
CH604_RHILO1.310e-1961.0460 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH603_RHILO1.310e-1961.0460 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH601_THEFY1.310e-1962.3460 kDa chaperonin 1 OS=Thermobifida fusca (strain ... [more]
CH601_SYNJB1.310e-1959.7460 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH601_STRAL1.310e-1960.5360 kDa chaperonin 1 OS=Streptomyces albus G GN=gro... [more]
CH601_ANAVT1.310e-1961.0460 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH601_ANASP1.310e-1961.0460 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_SYNE71.711e-1959.7460 kDa chaperonin OS=Synechococcus elongatus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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