CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAS1 (60 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKDL F++D  A + +  GV+KLA+ V VT+GPKGRNVVL+ +Y +P I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    2 AKDLKFSED--ARQSMLRGVDKLANAVKVTIGPKGRNVVLDKEYTSPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LYSSC (60 kDa chaperonin OS=Lysinibacillus sphaericus (strain C3-41) GN=groL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F++D  ++  +  GV+KLA+ V +TLGPKGRNVVLE K+G+P I NDGVT+AKE+ELE+P EN+GAKLV +
Sbjct:    2 AKDIKFSEDARSL--MLQGVDKLANAVKITLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPYENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+G+P I NDGV++A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKMLKFGED--ARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F +D  A + +Q GV+KLAD V VTLGPKGRNVVL+ K+G+P I NDGV++A+E+ELEDP EN+GA+LV++
Sbjct:    2 AKMLKFGED--ARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED VEN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SALTO (60 kDa chaperonin 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F+ D  A  +L++GVN LAD V VTLGP+GRNVVL+ K+GAP I NDGVT+AKE+EL DP EN+GA+LV++
Sbjct:    2 AKILSFSDD--ARHQLEHGVNALADAVKVTLGPRGRNVVLDKKFGAPTITNDGVTIAKEIELTDPHENLGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_TSUTY (60 kDa chaperonin OS=Tsukamurella tyrosinosolvens GN=groL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+K   A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKTIAFDKK--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_TETHA (60 kDa chaperonin OS=Tetragenococcus halophilus GN=groL PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F++D  A + + NGV+KLAD V VTLGP+GRNVVLE  YG+P I NDGVT+AKE+ELE+  EN+GA+LV +
Sbjct:    2 AKDIKFSED--ARRSMLNGVSKLADTVKVTLGPRGRNVVLEKSYGSPLITNDGVTIAKEIELENRFENMGAQLVSE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STAS11.711e-1961.8460 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]
CH60_LYSSC1.711e-1960.5360 kDa chaperonin OS=Lysinibacillus sphaericus (st... [more]
CH60_CLOBB1.711e-1961.8460 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA1.711e-1961.8460 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH602_TRIEI1.711e-1962.3460 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNS31.711e-1959.7460 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SALTO1.711e-1963.1660 kDa chaperonin 2 OS=Salinispora tropica (strain... [more]
CH601_SYNP61.711e-1959.7460 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]
CH60_TSUTY2.234e-1963.1660 kDa chaperonin OS=Tsukamurella tyrosinosolvens ... [more]
CH60_TETHA2.234e-1961.8460 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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