CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_TSUPA (60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKTIAFDEE--ARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK + +N++  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:    2 AKRIIYNEN--ARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LEUMM (60 kDa chaperonin OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=groL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK+L F++D  A  K++ GV+KLAD V  T+GPKGRNVVLE  YGAP I NDGVT+AK +ELED  EN+GAKLV +
Sbjct:    2 AKELKFSEDARA--KMKAGVDKLADTVKTTIGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHFENMGAKLVAE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_GUITH (60 kDa chaperonin, chloroplastic OS=Guillardia theta GN=groL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  343 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            A + L+ G++ LA+ V VTLGPKGRNVVLE KYGAP+IVNDGVT+AKE+ELED +EN G  L+RQA
Sbjct:   11 ARRALERGMDILAEAVSVTLGPKGRNVVLERKYGAPQIVNDGVTIAKEIELEDHIENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_STRCO (60 kDa chaperonin 2 OS=Streptomyces coelicolor GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_STRAW (60 kDa chaperonin 2 OS=Streptomyces avermitilis GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_STRAL (60 kDa chaperonin 2 OS=Streptomyces albus G GN=groL2 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N+LAD V VTLGPKGRNVVLE K+GAP I NDGV++AKE+ELEDP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ D  A +K+  GVN LAD V VTLGPKGRNVV++  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKEVKFHSD--AREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPW2.234e-1959.7460 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH601_SYNPX2.234e-1959.7460 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_TSUPA2.918e-1961.8460 kDa chaperonin OS=Tsukamurella paurometabola GN... [more]
CH60_THEEB2.918e-1961.0460 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_LEUMM2.918e-1963.1660 kDa chaperonin OS=Leuconostoc mesenteroides sub... [more]
CH60_GUITH2.918e-1968.1860 kDa chaperonin, chloroplastic OS=Guillardia the... [more]
CH602_STRCO2.918e-1961.8460 kDa chaperonin 2 OS=Streptomyces coelicolor GN=... [more]
CH602_STRAW2.918e-1961.8460 kDa chaperonin 2 OS=Streptomyces avermitilis GN... [more]
CH602_STRAL2.918e-1961.8460 kDa chaperonin 2 OS=Streptomyces albus G GN=gro... [more]
CH602_RHILO2.918e-1961.0460 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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