CX287068

Overview
NameCX287068
Unique NameCX287068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5982 contig Ccv1_Contig5982:297..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287068 vs. ExPASy Swiss-Prot
Match: ABAH1_ORYSI (Abscisic acid 8'-hydroxylase 1 OS=Oryza sativa subsp. indica GN=CYP707A5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.532e-11
Identity = 44/158 (27.85%), Postives = 76/158 (48.10%), Query Frame = 3 
Query:  114 ETLQLIAAYKTENPEPFIDVRVKRFGSIFTTHIFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSL-TMSFANSSIIRDHLLVDIDRLVRLHMDSWTDR-VLLMEEAKKITFELTVKQLMSFDPNEWTESLRKEY 581
            ET QL   Y ++NP  F + +  ++G IF THI G P V  + PE  RF+L  +  LF+ ++P S   +LG  ++   +G  H  +  + + +F+  SI      ++   L  LH  SW  + V   +E K     + +  +   +   + E L++ Y
Sbjct:   51 ETFQL---YSSKNPNVFFNKKRNKYGPIFKTHILGCPCVMVSSPEAARFVLVTQAHLFKPTFPASKERMLGPQAIFFQQGDYHAHLRRIVSRAFSPESIRASVPAIEAIALRSLH--SWDGQFVNTFQEMKTYALNVALLSIFGEEEMRYIEELKQCY 203
The following BLAST results are available for this feature:
BLAST of CX287068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ABAH1_ORYSI1.532e-1127.85Abscisic acid 8'-hydroxylase 1 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC01004C11SK Veg1 Citrus clementina cDNA clone C01004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287068 ID=CX287068; Name=CX287068; organism=Citrus clementina; type=EST; length=581bp
ATGATCTCGTTCTTTATATTTCCATTTCCACAGTCATTTTCTTTATTATA
AAAAGGTCCCGGAGCCGGCGGCTGCGGTTGCCGCCGGGAAGCCTCGGCCT
GCCCTTTCTTGGGGAGACCTTGCAACTCATAGCCGCATACAAAACTGAGA
ACCCGGAGCCCTTCATTGACGTGAGGGTGAAGCGGTTCGGTTCGATATTC
ACAACCCACATATTTGGCGAGCCGACGGTGTTCTCCGCCGACCCGGAAAC
GAACCGGTTCATCTTGCAGAATGAAGGGAAGTTGTTCGAGTGCAGCTACC
CCGGCTCGATATCGAACCTTCTGGGGAAGCACTCGTTGCTGCTGATGAAG
GGGAGTCTTCATAAGAGAATGCATTCTTTAACCATGAGCTTCGCTAATTC
GTCGATCATTAGAGACCATCTTTTGGTCGACATAGACCGGCTGGTCCGGC
TCCATATGGATTCCTGGACCGACCGGGTCCTTCTCATGGAAGAAGCCAAG
AAGATAACATTTGAGTTAACAGTGAAGCAGCTGATGAGTTTTGATCCGAA
TGAATGGACCGAGAGTCTCAGAAAAGAATAC
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