CX287073

Overview
NameCX287073
Unique NameCX287073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13420 contig Ccv1_Contig13420:674..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  190 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            YLGGS DP             G D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct:  188 YLGGSFDPL----------GLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  165 QVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  165 QVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CX287073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB24_TOBAC3.902e-1450.67Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_PETSP3.902e-1450.67Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL3.902e-1450.67Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC3.902e-1450.67Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_TOBAC3.902e-1450.67Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB48_MAIZE5.096e-1452.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH5.096e-1443.93Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.096e-1443.93Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2G_SOLLC6.656e-1450.67Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2F_SOLLC6.656e-1449.33Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01004D04SK Veg1 Citrus clementina cDNA clone C01004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287073 ID=CX287073; Name=CX287073; organism=Citrus clementina; type=EST; length=554bp
TTTTTTTTTTTTTAGCTAATCTAACAGTACATAAATTAATAACTAATAGA
TCCAGTTTAGCAATTAACATGTCATTTCCGCCAAGTTACATTCACTTTTC
ACATAAATAATTTTACAATGGGGAAAGTAGAATACAACAGAGTGGGGGAT
GACAAGGCTTGGAATATATAATTCCAAGCAATGAACAAGAAATTTCTCTC
TCAGTGAAACTTGAGGCTAGTCAAAACATTGTTGTTGACAGGATCAGCCA
AGTGATCCAATAGGTTCTGGTAAGGCCCAACTCCTGTAACAAGACCTTGA
ACAAAGTAACCCAAGATTGCCAACATTGCCAATCTTCCATTCTTCACTTC
CTTGAGCTTGAAATCCTTCATTGACTGCTCATCTTTCCCAAGACCCAGAG
GGTTGAATAGAGGTCCTCCAGGGTAAGCCGGATCGCCGGATCCTCCCAAG
TATTTCTCGAATCCGAGGAAGTATTGCCTGCCCATTGATCCTGGATTTGC
CCAGTCTTGGAATCTCCGGTGCTCGGCAAATCCCATGAGTGCCATTTCCA
GGAC
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