CX287073

Overview
NameCX287073
Unique NameCX287073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13420 contig Ccv1_Contig13420:674..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  228 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 551
            +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  161 VQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  228 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 551
            +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  161 VQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct:  169 YPGGSFDPL----------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  190 YPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  186 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  202 YPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct:  192 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  213 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 554
            V+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ NGRLAMLA LG+ +Q  VTG GP+ NLL H++DP +N ++ +L
Sbjct:  143 VIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMGF E  R       G +G     G +  Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  164 QVVLMGFVEGYR----VGGGPLGE----GLDPIYPGGAFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253          
The following BLAST results are available for this feature:
BLAST of CX287073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_ORYSJ1.937e-1341.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.937e-1341.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.937e-1349.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP1.937e-1349.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE1.937e-1349.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PINSY2.529e-1349.33Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA2.529e-1349.33Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PEA3.303e-1338.60Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB22_PETSP3.303e-1348.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_GOSHI3.303e-1341.67Chlorophyll a-b binding protein 151, chloroplastic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004D04SK Veg1 Citrus clementina cDNA clone C01004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287073 ID=CX287073; Name=CX287073; organism=Citrus clementina; type=EST; length=554bp
TTTTTTTTTTTTTAGCTAATCTAACAGTACATAAATTAATAACTAATAGA
TCCAGTTTAGCAATTAACATGTCATTTCCGCCAAGTTACATTCACTTTTC
ACATAAATAATTTTACAATGGGGAAAGTAGAATACAACAGAGTGGGGGAT
GACAAGGCTTGGAATATATAATTCCAAGCAATGAACAAGAAATTTCTCTC
TCAGTGAAACTTGAGGCTAGTCAAAACATTGTTGTTGACAGGATCAGCCA
AGTGATCCAATAGGTTCTGGTAAGGCCCAACTCCTGTAACAAGACCTTGA
ACAAAGTAACCCAAGATTGCCAACATTGCCAATCTTCCATTCTTCACTTC
CTTGAGCTTGAAATCCTTCATTGACTGCTCATCTTTCCCAAGACCCAGAG
GGTTGAATAGAGGTCCTCCAGGGTAAGCCGGATCGCCGGATCCTCCCAAG
TATTTCTCGAATCCGAGGAAGTATTGCCTGCCCATTGATCCTGGATTTGC
CCAGTCTTGGAATCTCCGGTGCTCGGCAAATCCCATGAGTGCCATTTCCA
GGAC
back to top