CX287073

Overview
NameCX287073
Unique NameCX287073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13420 contig Ccv1_Contig13420:674..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMGF E  R       G +G     G +  Y GG+ DP               D  S  + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct:  164 QVVLMGFVEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  189 YPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct:  164 QVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMG  E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  164 QVVLMGLIEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:  187 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP              +  Q+  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:  190 YPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  219 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL--GGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 554
            V E+ L+G AE+ R  +            L FE  L  GG  DP              KD +     K+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  HL+DP  NN+LT
Sbjct:  176 VAEVVLLGGAEYYRITNG-----------LDFEDKLHPGGPFDPL----------GLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = -1
Query:  228 YLGGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 452
            Y GGS DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  192 YPGGSFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  228 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL-GGSGDPAYXXXXXXXXXXXGKDEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 548
            ++ LMG  E  R       G++G     G +  L GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  165 QVVLMGLIEGYR----VGGGTLGE----GLDPLLPGGAFDPL----------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CX287073 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = -1
Query:  228 DEQSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 383
            D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:   87 DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
The following BLAST results are available for this feature:
BLAST of CX287073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB215_PEA3.303e-1342.59Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_MAIZE4.314e-1349.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC5.635e-1340.74Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC5.635e-1340.74Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOYBN7.359e-1349.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_WHEAT9.612e-1348.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_ARATH1.255e-1241.23Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_PHYPA1.639e-1249.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.639e-1240.74Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_PINSY2.141e-1259.62Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionC01004D04SK Veg1 Citrus clementina cDNA clone C01004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287073 ID=CX287073; Name=CX287073; organism=Citrus clementina; type=EST; length=554bp
TTTTTTTTTTTTTAGCTAATCTAACAGTACATAAATTAATAACTAATAGA
TCCAGTTTAGCAATTAACATGTCATTTCCGCCAAGTTACATTCACTTTTC
ACATAAATAATTTTACAATGGGGAAAGTAGAATACAACAGAGTGGGGGAT
GACAAGGCTTGGAATATATAATTCCAAGCAATGAACAAGAAATTTCTCTC
TCAGTGAAACTTGAGGCTAGTCAAAACATTGTTGTTGACAGGATCAGCCA
AGTGATCCAATAGGTTCTGGTAAGGCCCAACTCCTGTAACAAGACCTTGA
ACAAAGTAACCCAAGATTGCCAACATTGCCAATCTTCCATTCTTCACTTC
CTTGAGCTTGAAATCCTTCATTGACTGCTCATCTTTCCCAAGACCCAGAG
GGTTGAATAGAGGTCCTCCAGGGTAAGCCGGATCGCCGGATCCTCCCAAG
TATTTCTCGAATCCGAGGAAGTATTGCCTGCCCATTGATCCTGGATTTGC
CCAGTCTTGGAATCTCCGGTGCTCGGCAAATCCCATGAGTGCCATTTCCA
GGAC
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