CX287079

Overview
NameCX287079
Unique NameCX287079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   74 SYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            SYTA+LTS+LTVQ+L   ++ +D LR+S   IGYQ  SF    L  +    ESRL   ++P+E  +        GG+ A  D+ AY +LF++  C +++I+   F  +G+GFAFP  SPL  D+S  IL ++E   ++ I +
Sbjct:  667 SYTATLTSMLTVQELRPTVRHMDDLRNSGVNIGYQTGSFTFERL-KQMGYKESRLKTYDTPQEMHELFLKKSSNGGIDAAFDEVAYVKLFMAKYCSKYTIIEPTFKADGFGFAFPLGSPLVPDLSRQILNITEGETMKAIEN 807          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   74 SYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE-FSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSEN 472
            SYTASL S+LT Q+L+  I  + SL      +GYQ  SF    L +E    +S LVP ++ EE  + LK GP  GGVAA      Y  LFL   C  + +V + F  +G+GF FP  SPL  D+S AILK++E+
Sbjct:  658 SYTASLASLLTSQQLNPTITSMSSLLHRGETVGYQRTSFILGKL-NETGFPQSSLVPFDTAEECDELLKKGPKNGGVAAAFLGTPYVRLFLGQYCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAES 790          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.234e-20
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   74 SYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE-FSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSEN 472
            SYTASL S+LT QKL+  I  + SL      +GYQ  SF    L  E    +S LVP ++ EE  + L  GP KGGV+    +  Y  LFL   C  + +V + F  +G+GF FP  SPL  D+S AILK++E+
Sbjct:  658 SYTASLASLLTSQKLNPTITSMSSLLEKGETVGYQRTSFILGKL-KERGFPQSSLVPFDTAEECDELLSKGPKKGGVSGAFLEIPYLRLFLGQFCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAES 790          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.075e-19
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    2 EKTVSALGRXXXXXXXXXXXXXNSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDE-FNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            EK VS L R               SYTA+LTS LTVQ+       +  L  +   +GYQ  +F +++L+ E FN+  S+L P  S EE    L +G     ++A  D+ AY    LS  C +++IV   F   G+GFAFPR+SPL  D+S AIL +++  ++Q I +
Sbjct:  631 EKVVSNLARFVVVVWCFVVLVLTQSYTANLTSFLTVQRFQPAAINVKDLIKNGDYVGYQHGAFVKDFLIKEGFNV--SKLKPFGSSEECHALLSNG----SISAAFDEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQHIEN 791          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR29_ARATH (Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.396e-19
Identity = 60/166 (36.14%), Postives = 86/166 (51.81%), Query Frame = 2
Query:    2 EKTVSALGRXXXXXXXXXXXXXNSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            E  VS L R               SYTASLTS LTVQ L   +  ++ L  +   +GYQ  +F ++ L+      E +L P +S ++    L  G  KG +AA  D+ AY +  LS  C ++ +V   F   G+GFAFP++SPL  + S AIL L++N   Q+I D
Sbjct:  620 ENVVSNLARFVVVVWCFVVLVLTQSYTASLTSFLTVQSLQPTVTNVNDLIKNRDCVGYQGGAFVKDILLG-LGFHEDQLKPFDSAKDADDLLSKGKSKG-IAAAFDEVAYLKAILSQSCSKYVMVEPTFKTGGFGFAFPKNSPLTGEFSRAILNLTQNNVTQQIED 783          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR21_ARATH (Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   74 SYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            SYTASL S+LT Q L   +  I+SL +    +GYQ +SF    L D     E+ LV   SPE     L  G  +GGV+AV+ +  Y  +FL   C ++ +V   F  +G GF FP  SPL  DIS AILK+ E+    ++ +
Sbjct:  652 SYTASLASLLTTQHLHPTVTNINSLLAKGESVGYQ-SSFILGRLRDS-GFSEASLVSYGSPEHCDALLSKGQAEGGVSAVLMEVPYVRIFLGQYCNKYKMVQTPFKVDGLGFVFPIGSPLVADISRAILKVEESNKANQLEN 791          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 56/166 (33.73%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 EKTVSALGRXXXXXXXXXXXXXNSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC-EFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            EK VS L R               SYTA+LTS  TV+ L   +     L   N  IGYQ  +F R  L  +   DES+L P  S  E  +   +G     + A  D+ AY ++ LS    ++++V   F   G+GF FP+ SPL  D+S AIL +++  ++Q I +
Sbjct:  636 EKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFVRELLKSQ-GFDESQLKPFGSAVECDELFSNGT----ITASFDEVAYIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIEN 796          
BLAST of CX287079 vs. ExPASy Swiss-Prot
Match: GLR14_ARATH (Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   71 SSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEFNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQEFTKNGWGFAFPRDSPLAVDISTAILKLSENGDLQRIHD 496
            S+YTA+LTS++TVQ+    I+G+     SN  IG+   S A N + D       R   L + +++  AL++G     ++ +VD+  Y +LF++    EF IV  E   NG+GFAF + SPL   +S  I KL     L+ I +
Sbjct:  645 SNYTATLTSVMTVQQ----IRGL----KSNENIGFFSASIAANVVNDNPTFQGPRYKGLKTADDFTNALRNGT----ISFIVDEVPYVKLFVAKHPSEFVIVETESVTNGFGFAFQKGSPLVQKVSREIEKLRRTEKLKAIEN 775          
The following BLAST results are available for this feature:
BLAST of CX287079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLR26_ARATH2.167e-2038.73Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]
GLR22_ARATH2.167e-2043.28Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=... [more]
GLR23_ARATH8.234e-2042.54Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH1.075e-1936.53Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR29_ARATH2.396e-1936.14Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=... [more]
GLR21_ARATH1.315e-1739.44Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=... [more]
GLR27_ARATH1.607e-1533.73Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]
GLR14_ARATH2.172e-1234.97Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01004D12SK Veg1 Citrus clementina cDNA clone C01004D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287079 ID=CX287079; Name=CX287079; organism=Citrus clementina; type=EST; length=498bp
AGAAAAAACTGTTAGCGCACTTGGTCGCCTAGTGCTAATCATATGGCTAT
TTGTGGTTCTCATAATAAACTCAAGCTACACTGCAAGCCTAACATCAATC
CTTACAGTGCAAAAGCTATCTTCTCCCATCAAAGGCATTGATAGTTTAAG
ATCAAGCAATTATCCCATCGGTTATCAGGTGAACTCATTTGCAAGAAACT
ACTTGGTAGATGAATTCAATATTGATGAGTCAAGACTTGTACCTCTAAAT
TCACCAGAAGAGTATGCTAAAGCCTTGAAGGATGGCCCACATAAAGGCGG
TGTTGCCGCAGTGGTTGATGACCGTGCGTATGCAGAGCTCTTCCTCTCAA
CCAGATGTGAATTCAGTATTGTGGGTCAAGAGTTCACTAAAAATGGCTGG
GGTTTTGCTTTTCCTCGGGACTCGCCTTTAGCAGTTGACATATCAACCGC
CATATTGAAGCTGTCAGAGAATGGTGACCTTCAGAGGATTCATGATAA
back to top