CX287081

Overview
NameCX287081
Unique NameCX287081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10194 contig Ccv1_Contig10194:119..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.041e-15
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            +RC NC +  PKDKAIKR+ +RN+ E AA+RD+ EA VY  YT+PKLY K+QYC
Sbjct:   21 VRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14
Identity = 38/80 (47.50%), Postives = 42/80 (52.50%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQR 242
            +RC NC K  PKDKAIKR  +RNI E AAVRD+ EA VY  Y LPK Y K+ YC                      PPQR
Sbjct:   21 VRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQR 100          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14
Identity = 38/80 (47.50%), Postives = 42/80 (52.50%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYCXXXXXXXXXXXXXXXXXXXXXEPPQR 242
            +RC NC K  PKDKAIKR  +RNI E AAVRD+ EA VY  Y LPK Y K+ YC                      PPQR
Sbjct:   21 VRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQR 100          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYDGYTLPKLYAKMQYC 164
            +RC NC +  PKDKAIKR+ +RN+ E AA+RD+ EA VY  Y +PK+Y K+QYC
Sbjct:   21 VRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYC 74          
BLAST of CX287081 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.793e-12
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 3
Query:    3 IRCSNCGKCCPKDKAIKRFLVRNIAEQAAVRDVQEARVYD--GYTLPKLYAKMQYC 164
            IRC+NC +C PKDKA+KRF +R I E AAV+D+ +  V++  GY  P+ Y K QYC
Sbjct:   21 IRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYC 76          
The following BLAST results are available for this feature:
BLAST of CX287081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS26B_SCHPO5.041e-1561.1140S ribosomal protein S26-B OS=Schizosaccharomyces... [more]
RS26B_YEAST4.267e-1447.5040S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST4.267e-1447.5040S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26A_SCHPO4.267e-1457.4140S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26_DICDI1.793e-1253.5740S ribosomal protein S26 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC01004E02SK Veg1 Citrus clementina cDNA clone C01004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287081 ID=CX287081; Name=CX287081; organism=Citrus clementina; type=EST; length=269bp
TCATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATT
AAGAGGTTTTTGGTGAGGAACATTGCTGAGCAAGCTGCTGTTAGGGATGT
TCAGGAGGCGCGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTA
AGATGCAGTACTGCGTCTCGAGTGCGATCCACTCTCATGTGGTGAGAGTT
CGGTCCCGTACTAACAGGAGGATCCGCGAGCCCCCGCAACGCTTCATGCG
CAGGGATGATGTCCCAAAG
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