CX287101

Overview
NameCX287101
Unique NameCX287101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287101_ssr105 microsatellite CX287101_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:100..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM0 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9301) GN=rlmN PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG + ++L+ +A+D GQ  +RG+Q+++ IY  + K K I+    LP  FR  L++ G+ V  L I     A DGT+KLL+  EDN  IE VGIP E      RLTAC+SSQV
Sbjct:    4 LLGSTIKDLENVALDYGQAGFRGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRLKDDGFKVSDLSIHERNLANDGTLKLLLSTEDNESIECVGIPTE-----KRLTACLSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPW (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH7803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  136 ANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            +  LLG+   EL++ AV  GQ ++RG+QLH  +Y +   ++++   LP+++R  LQ+ G  +GRL       A D T KLL+  +D   +ETVGIP +      RLT CVSSQV
Sbjct:    7 SKTLLGLGASELERWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLGTDDGETLETVGIPTD-----QRLTVCVSSQV 115          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMS (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S  +L+ +A+D GQ ++RG+Q+++ IY  + K K I+    LP  FR  L+  G+ V  L I     A DGT+KLL+  EDN  IE VGIP E      RLTAC+SSQV
Sbjct:    4 LLGSSINDLENVALDYGQAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLLSTEDNESIECVGIPTE-----KRLTACLSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM5 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9515) GN=rlmN PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S ++L+ +A++ GQ ++RG+Q++  +Y  K + K I+    LP +FRN L++ G+  G L +     A DGT+KLL+   DN  +E VGIP E      RLTAC+SSQV
Sbjct:    4 LLGCSVKDLENVALNYGQAAFRGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQLKKEGFIFGELILKEKYLANDGTLKLLLNTRDNESVECVGIPTE-----KRLTACLSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMP (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S ++L+K+A++ GQ ++RG+Q+++ +Y  K + K I+    LP  FR+ L+   +  G L +     A DGT+KLL+   DN  +E VGIP E      RLTAC+SSQV
Sbjct:    4 LLGCSVKDLEKIALNYGQAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLLNTRDNESVECVGIPTE-----KRLTACLSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROMM (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9313) GN=rlmN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S  EL+  AV  GQ ++RG+QLH  +Y +  +  E    LP+S+R  LQ+ G T+GRL       A D T KLL+   D   IE+VGIP +      RLT C+SSQV
Sbjct:   13 LLGCSATELEGWAVAEGQPAFRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQQRGITIGRLLEVNRAVAVDDTTKLLLATVDGETIESVGIPTQ-----QRLTVCLSSQV 118          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM9 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIY--KRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S ++L+ +A+D GQ ++RG+Q++  IY  + K K I+    LP  FR  L++ G+ V  L       A DGT+KLL+   DN  IE VGIP E      RLTAC+SSQV
Sbjct:    4 LLGSSIKDLENIALDYGQAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLLSTNDNESIECVGIPTE-----KRLTACLSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S   L+  AV  GQ +YRG+QLH  IY++ ++ +E     P+++R  +Q   + VGR  I +   A DGTVK L+ L D +LIETVGIP        RLT CVSSQV
Sbjct:    8 LLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQ--SYPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPT-----AKRLTVCVSSQV 111          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_PROM3 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9303) GN=rlmN PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.019e-16
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S  EL+  AV  GQ ++RG+QLH  +Y +  +  +    LP+S+R  LQ+ G T+GRL       A D T KLL+   D   IE+VGIP +      RLT C+SSQV
Sbjct:   13 LLGCSATELESWAVAEGQPAFRGRQLHDWLYAKGARSFDAITVLPKSWRISLQQRGLTIGRLLEVNRAVAVDDTTKLLLATVDGETIESVGIPTQ-----QRLTVCLSSQV 118          
BLAST of CX287101 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.630e-16
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  145 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 477
            LLG S+ +L   A    Q +YRG+Q+H  IY++ V  + +   LP+ +R ++ +    VGR  I     A DGTVK L+KL D ++IETVGIP +      RLT CVSSQV
Sbjct:   13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIADI--PVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQ-----KRLTVCVSSQV 116          
The following BLAST results are available for this feature:
BLAST of CX287101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RLMN_PROM02.054e-1745.13Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNPW2.683e-1740.35Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMS3.504e-1746.02Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM53.504e-1742.48Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMP4.576e-1741.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMM7.805e-1744.14Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM97.805e-1744.25Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJB1.019e-1645.95Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM31.019e-1643.24Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACAM18.630e-1643.24Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC01004F12SK Veg1 Citrus clementina cDNA clone C01004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287101 ID=CX287101; Name=CX287101; organism=Citrus clementina; type=EST; length=477bp
ATGACTCTGCTTCGGCAAGTGATCTCTGCTCCCGTAGCACATGCGGTGGT
GCTTTCTCGCTCCTGCCTTGCAGTTTCTGTGACCCCGCGGCGCAAGTTAT
CTGTTTCTTCTTCTTCACGTGCCCCTCGCGTGGACGCCAACGTGCTCCTT
GGCATGTCCGAGCAGGAGCTTCAAAAACTCGCCGTCGACCTCGGCCAGCA
AAGTTACAGAGGGAAGCAGCTTCATCATCTAATTTACAAAAGAAAGGTCA
AAGAAATTGAAAATTTTATTCAACTGCCTCAGTCCTTCAGAAATGATCTC
CAAGAAGCTGGATGGACGGTTGGTCGCTTGCCGATTTTTCGCACGGTCAC
TGCAGCTGATGGAACTGTTAAATTGCTAATAAAGCTGGAAGACAACAGAT
TGATTGAAACTGTTGGCATACCAGTTGAAGACGAGAAAGGTCCCATGCGT
CTTACCGCTTGTGTGTCATCGCAGGTA
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